Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G07
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   0.70 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   1.6  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    25   4.9  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 28  IYSYRFLFSYIILTSFFYRYNGDSHHHDWF 117
           ++++ FLFS+ +++S F R     HHH  F
Sbjct: 40  LHAFVFLFSHTLVSSQFRRLKLPYHHHHTF 69


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +1

Query: 37   YRFLFSYIILTSFFYRYNGDSHHHDWFLGSWFLDKFNHRSMSL 165
            +RF+F  + L         DS +  W+ G W+   + + + +L
Sbjct: 1758 HRFIFKILTLLCLSREVKQDSANISWWSGKWYGKGYGYHAFTL 1800


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
 Frame = +1

Query: 40  RFLFSYIILTSFFYRYNGDSH-----HHDWFLGSWFLDKFNHRSMSLWCKNRPKNPPHL 201
           RF    + L  F+    G+ H     + D FL    ++K NH ++    +   +N P L
Sbjct: 6   RFFIYGLFLACFYTTVFGEKHFEAEEYRDSFLSQENMNKINHTTIERLFREMTENDPSL 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,642,803
Number of Sequences: 5004
Number of extensions: 31695
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)