Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G07
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39745-3|AAA80445.1|  337|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AC024882-6|AAF60925.2|  340|Caenorhabditis elegans Seven tm rece...    27   7.4  
Z93379-8|CAC35812.2|  354|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z81124-6|CAB03375.1|  335|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>U39745-3|AAA80445.1|  337|Caenorhabditis elegans Hypothetical
           protein F41C6.4 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 13  DRYYIIYSYRFLFSYIILTSFFYRYNGDSHHHDWFLGSWFLDKFNHRSMS 162
           D +  IYSY F+F+    T   + Y+  + H   + G  F+ +  +  M+
Sbjct: 276 DLFCSIYSYHFMFNGRTTTVLHFGYDATNRHPYIYFGMPFIARAANSEMA 325


>U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical
           protein C09B8.4 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 246 ISGSQLPYFCLKLISQMRWIFWTILAPE*HRS--VVKFIKKPRTKKPVMVM 100
           +  S   Y  ++ I QMR IFWT   PE H    V        T KPV++M
Sbjct: 10  LKSSSSTYGGIRNIIQMRNIFWT-RVPEPHMKYHVASTKANASTSKPVVLM 59


>AC024882-6|AAF60925.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 153 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 249 YISGSQLP-YFCLKLISQMRWIF--WTILAPE 163
           Y +G +L  +FC+ L   + W+F  W  +AP+
Sbjct: 126 YFAGKRLILWFCIPLFGGLSWVFLCWCSMAPD 157


>Z93379-8|CAC35812.2|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.11 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 23  ILYTRIVFYFHI*FLLVFF 79
           I+Y RI+F+++   LLVFF
Sbjct: 149 IIYHRIIFFYNCAILLVFF 167


>Z81124-6|CAB03375.1|  335|Caenorhabditis elegans Hypothetical
           protein T21B4.8 protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 7   GIDRYYIIYSYRFLFSYIILTSFFY 81
           G    YII+SY F+FS  I    F+
Sbjct: 199 GFSETYIIFSYVFMFSIAIFEMTFF 223


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 8   GLIDIILYTRIVF-YFHI*FLLVFFIDIMGIVITMTGFLVLGFL 136
           GL++I  Y +  + ++   +++VF   +M I+  +T F  LGFL
Sbjct: 410 GLMNIASYNKKTYNWYRDVYIIVFLDTLMSILGGITVFSTLGFL 453


>U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical
           protein ZK381.8 protein.
          Length = 554

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 397 TFLFVQRPLHSNSNNN 350
           T + VQRPL  N NNN
Sbjct: 413 TLIHVQRPLQKNGNNN 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,711,703
Number of Sequences: 27780
Number of extensions: 168589
Number of successful extensions: 439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)