Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G06
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    27   1.1  
SPBC1709.09 |||mitochondrial translation termination factor|Schi...    26   2.6  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    25   6.0  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    25   6.0  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    24   7.9  

>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 128 SVYHKPPTAFVEG 166
           S+YHKPP  FV+G
Sbjct: 572 SIYHKPPNRFVKG 584


>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 335 DPDWKTVLEPVEDHRYP*TASR 270
           D D K +L+ +ED RYP  A++
Sbjct: 132 DVDIKNILKAIEDSRYPFVANK 153


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 267 LATCCLWISVVLHRLQHRLPI 329
           +A  CLWI+   H  + R+P+
Sbjct: 174 VACVCLWIASKFHETEDRVPL 194


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 219 NHNHSNPLSYLTRSH*LATCCLWIS 293
           N N  N  S++T    +AT CLW++
Sbjct: 390 NKNRDNLASHVTVISAVATLCLWLT 414


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 395 PKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
           PK  P  D   E+ +DL +    W+  LEP +  R+
Sbjct: 19  PKKNPTVDELFEIAIDLEESGDRWR--LEPAKCLRF 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,316,454
Number of Sequences: 5004
Number of extensions: 20071
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)