Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_G06
(407 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans AP... 40 0.001
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 40 0.001
Z11115-9|CAD30453.1| 889|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z11115-8|CAD30452.1| 888|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z11115-7|CAD30451.1| 899|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z11115-6|CAD30450.1| 894|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z11115-5|CAA77453.2| 883|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z11115-4|CAA77448.2| 905|Caenorhabditis elegans Hypothetical pr... 27 5.2
AF320904-1|AAG41437.1| 889|Caenorhabditis elegans UNC-32F vacuo... 27 5.2
AF320903-1|AAG41436.1| 888|Caenorhabditis elegans UNC-32E vacuo... 27 5.2
AF320902-1|AAG41435.1| 899|Caenorhabditis elegans UNC-32D vacuo... 27 5.2
AF320901-1|AAG41434.1| 894|Caenorhabditis elegans UNC-32C vacuo... 27 5.2
AF320900-1|AAG41433.1| 883|Caenorhabditis elegans UNC-32B neuro... 27 5.2
AF320899-1|AAG41432.1| 905|Caenorhabditis elegans UNC-32A vacuo... 27 5.2
>AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans APB-1
protein, isoform c protein.
Length = 827
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 14/69 (20%)
Frame = +2
Query: 128 SVYHKPPTAFVEGRGAGVRKSLPARGA--------------AXXXXXXXXXTVIPNQESL 265
SVYHKPP+AF++ A +R+ P A A TVIP+Q+ +
Sbjct: 569 SVYHKPPSAFIDPAKAPLRQINPIPAAKFGSSLLDTSSTPNAARNGSAAAPTVIPSQDQV 628
Query: 266 IGDLLSMDI 292
I DLLS+D+
Sbjct: 629 IADLLSLDL 637
Score = 34.3 bits (75), Expect = 0.034
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 16 AAAKEVVLADKPLISXXXXXXXXXXXXXXICHISSLA 126
AAAK VVL +KPLIS +CHI +LA
Sbjct: 532 AAAKNVVLTEKPLISEETDLLEPSLLEQLVCHIGTLA 568
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 14/69 (20%)
Frame = +2
Query: 128 SVYHKPPTAFVEGRGAGVRKSLPARGA--------------AXXXXXXXXXTVIPNQESL 265
SVYHKPP+AF++ A +R+ P A A TVIP+Q+ +
Sbjct: 569 SVYHKPPSAFIDPAKAPLRQINPIPAAKFGSSLLDTSSTPNAARNGSAAAPTVIPSQDQV 628
Query: 266 IGDLLSMDI 292
I DLLS+D+
Sbjct: 629 IADLLSLDL 637
Score = 34.3 bits (75), Expect = 0.034
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 16 AAAKEVVLADKPLISXXXXXXXXXXXXXXICHISSLA 126
AAAK VVL +KPLIS +CHI +LA
Sbjct: 532 AAAKNVVLTEKPLISEETDLLEPSLLEQLVCHIGTLA 568
>Z11115-9|CAD30453.1| 889|Caenorhabditis elegans Hypothetical
protein ZK637.8f protein.
Length = 889
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 267 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 300
>Z11115-8|CAD30452.1| 888|Caenorhabditis elegans Hypothetical
protein ZK637.8e protein.
Length = 888
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 272 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 305
>Z11115-7|CAD30451.1| 899|Caenorhabditis elegans Hypothetical
protein ZK637.8d protein.
Length = 899
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 283 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 316
>Z11115-6|CAD30450.1| 894|Caenorhabditis elegans Hypothetical
protein ZK637.8c protein.
Length = 894
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 272 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 305
>Z11115-5|CAA77453.2| 883|Caenorhabditis elegans Hypothetical
protein ZK637.8b protein.
Length = 883
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 267 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 300
>Z11115-4|CAA77448.2| 905|Caenorhabditis elegans Hypothetical
protein ZK637.8a protein.
Length = 905
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 283 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 316
>AF320904-1|AAG41437.1| 889|Caenorhabditis elegans UNC-32F vacuolar
proton pump 101kDa subunit variant protein.
Length = 889
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 267 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 300
>AF320903-1|AAG41436.1| 888|Caenorhabditis elegans UNC-32E vacuolar
proton pump 101kDa subunit variant protein.
Length = 888
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 272 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 305
>AF320902-1|AAG41435.1| 899|Caenorhabditis elegans UNC-32D vacuolar
proton pump 103kDa subunit variant protein.
Length = 899
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 283 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 316
>AF320901-1|AAG41434.1| 894|Caenorhabditis elegans UNC-32C vacuolar
proton pump 102kDa subunit variant protein.
Length = 894
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 272 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 305
>AF320900-1|AAG41433.1| 883|Caenorhabditis elegans UNC-32B neuronal
vacuolar protonpump 100 kDa subunit variant protein.
Length = 883
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 267 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 300
>AF320899-1|AAG41432.1| 905|Caenorhabditis elegans UNC-32A vacuolar
proton pump 103kDa subunit variant protein.
Length = 905
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 398 CPKTQPAPDHHREVRLDLRQVDPDWKTVLEPVEDHRY 288
CP T P RE+ + + D KTVL +DHR+
Sbjct: 283 CPDT---PQERREMSIGVMTRIEDLKTVLGQTQDHRH 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,687,695
Number of Sequences: 27780
Number of extensions: 127045
Number of successful extensions: 260
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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