Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G06
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   7.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.1  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   7.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   7.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   7.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   7.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 161 RRRPSVVCDRPKANELI 111
           RRR S++CD    NE +
Sbjct: 379 RRRSSLICDVYGVNESV 395


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 306 RLQHRLPIWIYLPE 347
           RLQHR  +W+   E
Sbjct: 35  RLQHRREVWLIQQE 48


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 306 RLQHRLPIWIYLPE 347
           RLQHR  +W+   E
Sbjct: 35  RLQHRREVWLIQQE 48


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 306 RLQHRLPIWIYLPE 347
           RLQHR  +W+   E
Sbjct: 35  RLQHRREVWLIQQE 48


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 306 RLQHRLPIWIYLPE 347
           RLQHR  +W+   E
Sbjct: 35  RLQHRREVWLIQQE 48


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 306 RLQHRLPIWIYLPE 347
           RLQHR  +W+   E
Sbjct: 35  RLQHRREVWLIQQE 48


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 306 RLQHRLPIWIYLPE 347
           RLQHR  +W+   E
Sbjct: 35  RLQHRREVWLIQQE 48


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 306 RLQHRLPIWIYLPE 347
           RLQHR  +W+   E
Sbjct: 35  RLQHRREVWLIQQE 48


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 306 RLQHRLPIWIYLPE 347
           RLQHR  +W+   E
Sbjct: 35  RLQHRREVWLIQQE 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,665
Number of Sequences: 438
Number of extensions: 1628
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)