Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G04
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.0  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   4.6  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   6.1  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   6.1  
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    24   8.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   8.0  

>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 368 YFLSMTICNQNQSILSQSHNETYAFPSN-YKQICQLRSTI 252
           Y LS      ++S LS S NET  F SN + Q+ +L +++
Sbjct: 194 YRLSKLSMGNSKSDLSHSDNETGHFYSNFFSQVMELNASV 233


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 265 YAPLYGEIIHKICYFKTFFTISIRMSLYNGNFE 167
           ++  Y  ++H IC F  FF I + ++LY   ++
Sbjct: 10  FSAQYVALVHTICSFAAFF-IPLALALYTHYYQ 41


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -3

Query: 410 IGSRVFTSSTSLDKYFLSMTICNQNQSILSQSHNETYAFPSNYK 279
           IGS+ F  + S   +F++  +     ++   +HN  +AFP++Y+
Sbjct: 257 IGSQPFDDTNSARNHFITALV-----TLGEGNHNYHHAFPNDYR 295


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 292 PLIINKYVSYAPLYGEIIHKICYFK 218
           P +I   +S+ P+Y   +  ICY K
Sbjct: 72  PFLIKLLISFTPIYVLNVLAICYLK 96


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 350 ICNQNQSILSQSHNETYAFPS-NYKQICQLRSTI 252
           + N  Q ++ +SH+ T    + NYKQ+  +R T+
Sbjct: 163 LANLLQKMIVESHHRTSQLHTDNYKQVDNVRQTL 196


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 341 QNQSILSQSHNETYAFPSNYKQICQLRSTIWRNYS 237
           + QS +S  ++E   +   Y+Q CQ    + R+Y+
Sbjct: 400 KGQSSVSDLYSERLYYKQKYEQTCQEVERLQRSYN 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,368
Number of Sequences: 5004
Number of extensions: 32959
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)