Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G04
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141...    34   0.038
05_03_0209 + 10139857-10140041,10140223-10140294,10140374-101404...    28   2.5  
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579...    28   3.3  
08_01_0131 + 1050028-1050459,1051599-1051701,1052338-1052393,105...    27   4.4  
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793...    27   5.8  

>02_04_0435 +
           22912993-22913456,22913847-22914012,22914096-22914146,
           22914353-22914578,22915275-22915963,22916055-22916408
          Length = 649

 Score = 34.3 bits (75), Expect = 0.038
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -1

Query: 250 GEIIHKICYFKTFFTISIRMSLYNGNFEHDFDPFQNVGVTRNLTHLSSTDDN 95
           G ++++ICYFK+ F    ++ + NGN+     P  +  VT+ +  +     N
Sbjct: 230 GCLLYRICYFKSAFDGESKLQILNGNYRIPEQPKYSAAVTKLIKDMLEASPN 281


>05_03_0209 +
           10139857-10140041,10140223-10140294,10140374-10140445,
           10141095-10141166,10141427-10141498,10141628-10141663,
           10141958-10142029,10142107-10142181,10142449-10142514,
           10142610-10142675,10142748-10142792,10142882-10142946,
           10143066-10143445,10143530-10143728,10143801-10143959,
           10144042-10144160,10144294-10144504,10145336-10145567,
           10145650-10145800,10145899-10146162
          Length = 870

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 301 MLFPLIINKYVSYAPLYGEIIHKICYFKTFFTISIRMSLYNGNFEHDF 158
           ML       YVS   +   + +KICY   F  IS+   L   NF +++
Sbjct: 21  MLVKAFGKPYVSNTHMSAILCNKICYMLAFADISVAGYLVTWNFRNNY 68


>09_02_0207 -
           5793848-5794276,5794523-5794645,5794742-5795250,
           5795543-5795648,5795798-5795959,5796094-5796144,
           5796229-5796394,5796624-5797093
          Length = 671

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 250 GEIIHKICYFKTFFTISIRMSLYNGNF 170
           G ++++ICY K+ F    ++ + NGN+
Sbjct: 232 GCLLYRICYLKSAFDGESKLQILNGNY 258


>08_01_0131 +
           1050028-1050459,1051599-1051701,1052338-1052393,
           1052517-1052693,1052820-1052933,1053057-1053386
          Length = 403

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 410 IGSRVFTSSTSLDKYFLSMTICNQNQ 333
           I  +V TS+ S DK+ L+ TIC+ N+
Sbjct: 161 IARKVDTSNRSWDKFMLTETICSLNR 186


>06_02_0251 -
           13478902-13478952,13478989-13479055,13479168-13479379,
           13480144-13481540,13481574-13482432,13482537-13482836
          Length = 961

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 356 MTICNQNQSILSQSHNETYA 297
           + + NQ  +I+S+SHNET A
Sbjct: 645 IVLANQKNNIISRSHNETQA 664


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,595,422
Number of Sequences: 37544
Number of extensions: 170257
Number of successful extensions: 266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)