Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G04
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical pr...    30   0.75 
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    28   2.3  
Z78419-6|CAB01704.1|  487|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF016668-8|AAZ91349.1|  296|Caenorhabditis elegans Serpentine re...    27   5.3  
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ...    27   7.0  

>Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical
           protein ZK1128.3 protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +3

Query: 9   VLSAQRHYRISDTKKIPLKITGLTV*NTELSSVL 110
           V+ +  H+++ D  KIP +I  +++ N ++SS+L
Sbjct: 126 VVPSDEHFQLDDGSKIPSEIVSISMENGKISSIL 159


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = -2

Query: 258 HYMEKLFTKFVILKPFLLSPYV*AYITETLNMILTP 151
           H    LF  F+IL+PFLL PY+ +++  TL+ I +P
Sbjct: 823 HIFYVLFI-FLILRPFLLLPYL-SHLQLTLSAIHSP 856


>Z78419-6|CAB01704.1|  487|Caenorhabditis elegans Hypothetical
           protein F26A3.6 protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 328 FCRNHTTKHMLFPLIINKYVSYAPLYGEIIH 236
           F  NHT   M   L+  +Y S  PL  E+IH
Sbjct: 271 FKNNHTNYLMCNMLVAMRYCSCHPLMAELIH 301


>AF016668-8|AAZ91349.1|  296|Caenorhabditis elegans Serpentine
           receptor, class t protein41 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = -1

Query: 301 MLFPLIINKYVSYAPLYGEIIHKICY--FKTFFTISIRM-SLYNGNFEHDFDPFQNVGVT 131
           +LFP ++ KY S +     ++  +CY  +  FFT  +   S Y   F   FDPF     T
Sbjct: 97  ILFPTLVKKYFSGSRTTMVLMIPVCYGLYFAFFTPPLLFTSKYQAWF---FDPFIYENKT 153

Query: 130 RNLTHLSSTDDNSVF*TVSPVIFSGIF 50
               +   T  N++F  V+     G F
Sbjct: 154 LEYQNFPHT-ANNLFIVVATCALYGYF 179


>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
           protein C33E10.6 protein.
          Length = 1014

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -3

Query: 395 FTSSTSLDKYFLSMTICNQNQSILSQSHNETYAFPSNYKQICQLRSTIWRNY 240
           F S  S  KY   + +C++N+++  +  N  Y    N+K+  ++  TI+ ++
Sbjct: 195 FNSFWSKTKYENHLELCSKNKAVEYKKPNYDYIEFKNFKKSQKIPFTIYSDF 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,111,476
Number of Sequences: 27780
Number of extensions: 176582
Number of successful extensions: 358
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)