Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_G03
(523 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 152 2e-37
Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81092-1|CAB03144.1| 143|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z75525-3|CAA99762.3| 245|Caenorhabditis elegans Hypothetical pr... 27 6.2
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 6.2
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 27 8.1
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 27 8.1
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 27 8.1
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 27 8.1
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 27 8.1
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 27 8.1
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 27 8.1
AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical ... 27 8.1
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 152 bits (368), Expect = 2e-37
Identities = 82/158 (51%), Positives = 99/158 (62%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFNEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
M +PK + IYEYLFNEGV VAKKD++A HP++E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 208 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 387
AWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V P A DR
Sbjct: 61 AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDRE 119
Query: 388 AYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGRSAP 501
AYR +K + GPG A V +R GFGRG P
Sbjct: 120 AYRT--------EKVTEAGPGGAPV-YRAGFGRGAPPP 148
>Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical
protein C14H10.3 protein.
Length = 830
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 129 IWMFGCMVVFLSYHDSLIEEVLIDRNTVLFWHQHLGQPTFH 7
+W F C+ V +S + +L+ R F+ QH+ +P H
Sbjct: 10 LWAFACLSVSISRRSEKGKCMLVPRERRHFFVQHVSRPHIH 50
>Z81092-1|CAB03144.1| 143|Caenorhabditis elegans Hypothetical
protein F58D12.1 protein.
Length = 143
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 497 ADRPLPKPPLNSTSAEPGPTSA 432
+DRP P+PP +S S+ P P SA
Sbjct: 45 SDRP-PRPPSSSASSSPAPGSA 65
>Z75525-3|CAA99762.3| 245|Caenorhabditis elegans Hypothetical
protein C03D6.5 protein.
Length = 245
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +1
Query: 118 KHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPA 297
+HPD+ KIP ++ L Y ++F + W++ NE + + + P + +
Sbjct: 78 EHPDISKIPVEDIVGVSVLLLRCKYNDQEFI--NMGWFVANEYTDE-ELKENPPAKPLIE 134
Query: 298 TLKRSVRTETVR 333
L R + TE +R
Sbjct: 135 KLSRKIETEDLR 146
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +1
Query: 337 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFG 483
G VG P AP + + A A P G P A PG A G G
Sbjct: 259 GNVGAPGAPGQVVDVPGAPGPAGPPGPPGPSGAPGHPGQAGSSLPGAPG 307
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 8 WKVGCPRC*CQNKTVFLSMSTSSMRES 88
W GC C C+NK F S+ + + S
Sbjct: 534 WSDGCRHCFCENKQEFCSLISCPTKPS 560
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 8 WKVGCPRC*CQNKTVFLSMSTSSMRES 88
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 8 WKVGCPRC*CQNKTVFLSMSTSSMRES 88
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 8 WKVGCPRC*CQNKTVFLSMSTSSMRES 88
W GC C C+NK F S+ + + S
Sbjct: 534 WSDGCRHCFCENKQEFCSLISCPTKPS 560
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 8 WKVGCPRC*CQNKTVFLSMSTSSMRES 88
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 8 WKVGCPRC*CQNKTVFLSMSTSSMRES 88
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 8 WKVGCPRC*CQNKTVFLSMSTSSMRES 88
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 8 WKVGCPRC*CQNKTVFLSMSTSSMRES 88
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical
protein R11G11.14 protein.
Length = 404
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 55 KHGFVLASTSWTTNFPHR 2
+HG + AST WT N P +
Sbjct: 79 QHGLLCASTDWTMNLPEQ 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,170
Number of Sequences: 27780
Number of extensions: 238333
Number of successful extensions: 921
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -