Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_G02
(358 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 41 7e-05
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 37 8e-04
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 32 0.023
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 32 0.030
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 31 0.040
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 31 0.053
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 30 0.12
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 30 0.12
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 29 0.16
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 27 1.1
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 2.6
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 3.5
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 3.5
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 25 3.5
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 4.6
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 25 4.6
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual 25 4.6
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 24 6.1
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 6.1
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 24 8.0
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 24 8.0
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 24 8.0
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 40.7 bits (91), Expect = 7e-05
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +3
Query: 18 GNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALTLKPD 197
GN +D AL YT+AI+I+P +SN A+ + G A++ T L+L P
Sbjct: 90 GNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDALTCLSLDPH 149
Query: 198 FPDAYCNL 221
A+ L
Sbjct: 150 HARAFGRL 157
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 37.1 bits (82), Expect = 8e-04
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +3
Query: 15 MGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALTLKP 194
+G + D AL Y A++ NP A +A+I ++ P AI+ Y+T L P
Sbjct: 340 IGRLAELFDDQDKALSAYESALRQNPYSIPAMLQIATILRNREQFPLAIEYYQTILDCDP 399
Query: 195 DFPDAYCNLAHC 230
+ + L HC
Sbjct: 400 KQGEIWSALGHC 411
Score = 36.3 bits (80), Expect = 0.001
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 12 NMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGN-IPEAIQSYRTALTL 188
++G ++ AL Y+RAI++NP ++ +L ++++ N I +A+ +Y+ A L
Sbjct: 623 SIGVLYYQINQYQDALDAYSRAIRLNPYISEVWYDLGTLYESCHNQISDALDAYQRAAEL 682
Query: 189 KPDFP 203
P P
Sbjct: 683 DPTNP 687
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.3 bits (70), Expect = 0.023
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 12 NMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALTLK 191
N N + + A+ YT+AI+++ A +SN + H S + AI A+
Sbjct: 10 NEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDASKAIECD 69
Query: 192 PDFPDAY 212
P++ AY
Sbjct: 70 PEYAKAY 76
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 31.9 bits (69), Expect = 0.030
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 15 MGNTLKEMQDVAGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIQSYRTALTL 188
+GN + + A A++ YT AI + + A A +SN A+ + G A+ + + +
Sbjct: 29 IGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDAKQSDRI 88
Query: 189 KPDFP 203
KPD P
Sbjct: 89 KPDVP 93
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 31.5 bits (68), Expect = 0.040
Identities = 15/73 (20%), Positives = 37/73 (50%)
Frame = +3
Query: 6 RSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALT 185
++ +G + +++ + C+ +A+Q P+ + L + ++ EA+ SY A++
Sbjct: 441 QAGLGIIMYMLKEYERSADCFRQALQDEPSNEILWNKLGAALTNAEKNTEAVSSYNRAVS 500
Query: 186 LKPDFPDAYCNLA 224
L+P + N+A
Sbjct: 501 LQPQYVRVRSNMA 513
Score = 27.5 bits (58), Expect = 0.65
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +3
Query: 9 SNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALTL 188
+ +G L + A+ Y RA+ + P + SN+A + + G +A + A+ +
Sbjct: 476 NKLGAALTNAEKNTEAVSSYNRAVSLQPQYVRVRSNMAVSNINLGYFEDAAKHLLAAIDI 535
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 31.1 bits (67), Expect = 0.053
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = +3
Query: 15 MGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALTLKP 194
+ N ++ + AL+C RAIQ++P F A++ H + ++ S+R A+ +
Sbjct: 437 LANCFSLQREHSQALKCINRAIQLDPTFEYAYTLQGHEHSANEEYEKSKTSFRKAIRVNV 496
Query: 195 DFPDAYCNL 221
+A+ L
Sbjct: 497 RHYNAWYGL 505
Score = 27.1 bits (57), Expect = 0.86
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 15 MGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASI--HKDSGNIPEAIQSYRTAL 182
+G K+ + A C+ A+ INP A NL +I D+ N+ I Y TA+
Sbjct: 121 LGTMYKKAGFLKKATDCFVEAVSINPYNFSAFQNLTAIGVPLDANNV-FVIPPYLTAM 177
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 29.9 bits (64), Expect = 0.12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +3
Query: 54 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALTLKPDFPDAYCNLAHCL 233
A+ + A++I+P +A S L + SG A++++ A L PD D Y
Sbjct: 669 AIVHFQSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPD--DWYVKY-FIA 725
Query: 234 QIVCDWTDYEARMKKLLSIVA 296
+ D +YE + L I+A
Sbjct: 726 TLEKDMGEYEVAVSTLSEILA 746
Score = 29.5 bits (63), Expect = 0.16
Identities = 13/72 (18%), Positives = 35/72 (48%)
Frame = +3
Query: 15 MGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALTLKP 194
+G + + V A CY +++ +N + +N ++ + ++ A ++ ++++ P
Sbjct: 936 LGVLFSQTKAVRSAQHCYIQSLLLNERSSGVWANYGALCIQNHDVECANAAFTRSISIDP 995
Query: 195 DFPDAYCNLAHC 230
D A+ A+C
Sbjct: 996 DNSQAWLGKAYC 1007
Score = 24.2 bits (50), Expect = 6.1
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 9 SNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQ 164
+N G + DV A +TR+I I+P + A A G+I +A+Q
Sbjct: 968 ANYGALCIQNHDVECANAAFTRSISIDPDNSQAWLGKAYCSIAVGSIRKAVQ 1019
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 29.9 bits (64), Expect = 0.12
Identities = 16/85 (18%), Positives = 38/85 (44%)
Frame = +3
Query: 12 NMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALTLK 191
++G + D+ A+ C+ +++INP + A++++ L++
Sbjct: 526 SLGKYYYKKGDLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSIN 585
Query: 192 PDFPDAYCNLAHCLQIVCDWTDYEA 266
P+ +++ NLA + D T +A
Sbjct: 586 PEDGESWNNLASAMLKAKDHTKEQA 610
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 29.5 bits (63), Expect = 0.16
Identities = 19/80 (23%), Positives = 38/80 (47%)
Frame = +3
Query: 3 TRSNMGNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTAL 182
T S +GN + + A+ + RA+Q+N + A + + + + N AI+SYR A+
Sbjct: 340 TCSIIGNYYSLLSEHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAV 399
Query: 183 TLKPDFPDAYCNLAHCLQIV 242
+ A+ L +++
Sbjct: 400 DVNRKDYRAWYGLGQTYEVL 419
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 26.6 bits (56), Expect = 1.1
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +3
Query: 18 GNTLKEMQDVAGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALTLKPD 197
GN +D A+ +T+AI ++ +SN ++ + + +A++ LKPD
Sbjct: 9 GNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPD 68
Query: 198 F 200
+
Sbjct: 69 W 69
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 2.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2
Query: 144 FQSLYECWRDCCEHQRTRG*FVSLEYSTAKRRQRLAFLSRYYPCYSS 4
+QSL+E ++DC E+++ +V E T R+Q L L R Y +
Sbjct: 60 YQSLFEEFQDCFENEQLDVEWV--ESVTFHRKQNLEQLRRELKAYKN 104
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.0 bits (52), Expect = 3.5
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 111 SNLASIHKDSGNIPEAIQSYRTALTLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLL 284
S LA D IP+AI+SY LK D P N + +++ YE +K LL
Sbjct: 1105 SRLAKAQLDGIRIPDAIESY-----LKADDPS---NYSEVIELASRAGKYEELIKYLL 1154
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.0 bits (52), Expect = 3.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 279 VSSFEPRNRSNRIRFANNEPNCNRHQEN 196
VS EP + IRFAN+E N N +EN
Sbjct: 174 VSEGEPTAETFAIRFANSE-NANLFKEN 200
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 3.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 67 ILERYKLTPRSLMLTAISPAFIKTLEIYPKRFNRTEP 177
+ +R+ L S + AF + E+Y R N TEP
Sbjct: 669 VTDRFPLLKGSTDVITNLRAFAEQSEVYQSRLNATEP 705
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.6 bits (51), Expect = 4.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 119 EIAVSISERGVNLYRSSIALQSAGNVLHFFQGI 21
++A+ +S+ + LQ+A VLH F+G+
Sbjct: 2047 KVAIRVSKTSTEYDNITTYLQAARKVLHVFKGL 2079
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 4.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 260 VIGPIAYDLQTMSQIAIGIRK 198
+IGP+A L T +A+G++K
Sbjct: 130 MIGPLAVGLNTAKGLAVGLQK 150
>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
Length = 312
Score = 24.6 bits (51), Expect = 4.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 106 LTAISPAFIKTLEIYPKRFNRTEP 177
+ +I AF+K+L Y +N T+P
Sbjct: 1 MASIRQAFVKSLRFYDIGYNATDP 24
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 24.2 bits (50), Expect = 6.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 114 NLASIHKDSGNIPEAIQSYRTALTLKPDFPDA 209
NLA ++ GN A ++Y + L P F DA
Sbjct: 519 NLARCEEELGNTSVASEAYVSILEKHPSFIDA 550
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 6.1
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +3
Query: 66 YTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALTLKPDFPDAYCNLAHCLQIVC 245
Y + NP F+ L SI ++ ++ E I +++L P F N+ +Q
Sbjct: 182 YDESSLTNPEFSILVERLKSIEENLQSLQERISHCERSVSLSPSFAPP-SNVKSPVQQHR 240
Query: 246 DWTDYEARMKK 278
+ AR KK
Sbjct: 241 SFVSSSARAKK 251
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 23.8 bits (49), Expect = 8.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 255 DYEARMKKLLSIVA 296
DYE+RMK+LL +A
Sbjct: 258 DYESRMKRLLGSIA 271
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 23.8 bits (49), Expect = 8.0
Identities = 7/32 (21%), Positives = 18/32 (56%)
Frame = -3
Query: 194 WFQCQRGSVRLNRFGYISRVFMNAGEIAVSIS 99
W+ R + L+R ++ F+N+ +++ +S
Sbjct: 414 WYNMSRVNSELSRIKHLLNCFLNSSTVSLDVS 445
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 296 GHDAEEFLHSSLVIGPIAYDLQ 231
G A FL SL+IG I YD++
Sbjct: 542 GSMAFAFLFQSLIIGSIFYDMK 563
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,709
Number of Sequences: 5004
Number of extensions: 29506
Number of successful extensions: 137
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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