Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G02
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   5.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   7.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   7.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 138 SGNIPEAIQSYRTALTLKPDFPDAYCNLAHC 230
           SG IP   + +      + D+ DA+CN+  C
Sbjct: 336 SGEIPLEEEEWENEN--ESDYQDAFCNIVSC 364


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 295 PEQLDKNRLPSVHPNH 342
           PE+ D++ + S HP H
Sbjct: 418 PERFDQDAMASRHPMH 433


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 238 SYAIGPITRLE*RNSSASW 294
           S+ + P +R+E  NSS +W
Sbjct: 31  SFVMEPPSRVEFSNSSGAW 49


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 238 SYAIGPITRLE*RNSSASW 294
           S+ + P +R+E  NSS +W
Sbjct: 31  SFVMEPPSRVEFSNSSGAW 49


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 216 NLAHCLQIVCDW 251
           NLAH ++++ +W
Sbjct: 32  NLAHSMKVIYEW 43


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 126 IHKDSGNIPEAIQSYRTALTLKPDFPD 206
           IH+  G   +A   +RTA +   D  D
Sbjct: 260 IHRGGGTNTDARHLFRTASSTPEDLQD 286


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 266 SNEETPQHRGRNSWTR 313
           S + +  H G  SWT+
Sbjct: 398 SGQSSSHHHGSKSWTQ 413


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 258 NRSNRIRFANNEPNCNRHQENLVSMSTRFCTIESLR 151
           N  N+I  A ++     + +  VS S +   ++SLR
Sbjct: 551 NSGNKISLATSKSFIKANSQTEVSNSKKLDRLDSLR 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,321
Number of Sequences: 438
Number of extensions: 1965
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)