Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_G01
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 99 5e-22
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 95 8e-21
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 28 0.78
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 3.2
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 3.2
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 26 4.2
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 26 4.2
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 26 4.2
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 25 5.5
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 25 7.3
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 9.6
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 9.6
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 98.7 bits (235), Expect = 5e-22
Identities = 55/109 (50%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Frame = +1
Query: 166 AMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGA 345
A QSL SRGY+K ++ W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R
Sbjct: 45 ACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR--- 101
Query: 346 VGRPDAPARTAEDRSAYRRAPPAGAPHDKKAD-VCPGSADVEFRGGFGR 489
GRP+ R++ + YRRA +KK D PG FRGGFGR
Sbjct: 102 AGRPEPRERSSAADAGYRRA-------EKKDDGAAPGGFAPSFRGGFGR 143
Score = 38.3 bits (85), Expect = 7e-04
Identities = 16/29 (55%), Positives = 25/29 (86%)
Frame = +3
Query: 66 RRDVMVAKKDYHAPKHPDLEKIPNLQVIQ 152
++ V+VAKKD++ PKHP++ +PNLQVI+
Sbjct: 17 QQGVLVAKKDFNLPKHPEV-GVPNLQVIK 44
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 94.7 bits (225), Expect = 8e-21
Identities = 53/108 (49%), Positives = 63/108 (58%)
Frame = +1
Query: 166 AMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGA 345
A QSL SRGY+K ++ W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R
Sbjct: 45 ACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR--- 101
Query: 346 VGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVCPGSADVEFRGGFGR 489
GRP+ R + D + YRRA K P FRGGFGR
Sbjct: 102 AGRPEPRERASAD-AGYRRA------EKKDEGAAPSGFAPSFRGGFGR 142
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/26 (61%), Positives = 23/26 (88%)
Frame = +3
Query: 75 VMVAKKDYHAPKHPDLEKIPNLQVIQ 152
V+VAKKD++ PKHP++ +PNLQVI+
Sbjct: 20 VLVAKKDFNLPKHPEV-GVPNLQVIK 44
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 28.3 bits (60), Expect = 0.78
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 344 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMS 445
Q AGL+ HE L+ ++ AH + LL +R+ ++
Sbjct: 758 QEAGLIAMHEDLEAKEICQAHFKTALLALRKAIT 791
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1066
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 436 PSYHEELQLVVRADKLIYLQLFVLEHQACQLHHDVLSLYALTSSGLLVQ-FQEVSAGKF* 260
PSY + + +K ++L L L H + +LSLY + + +V+ V F
Sbjct: 992 PSYFDVFFPSLGMEKRVHLDLLNLTHVRFEEDQGILSLYDESGAVTVVKLLTSVKVKLFV 1051
Query: 259 GIQYPHLLNTS 227
+ P L+N S
Sbjct: 1052 QLSTPPLINVS 1062
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 352 RPDAPARTAEDRSAYRRAPPAGAPH 426
+P P + + Y++APPAGAP+
Sbjct: 113 QPPQPVQPNPYGAPYQQAPPAGAPY 137
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Frame = -3
Query: 290 ISGGKCRKILRYSIPSFVKYQ*KC-----LHANCSLTYPLDLSDCIAFFXVLD-HLEVRD 129
I K + L F K+ C + L +PL + CI +D + EV+D
Sbjct: 41 IKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRSKLRWPLLIIWCILIVFAIDKNFEVKD 100
Query: 128 LLEIWM 111
L IW+
Sbjct: 101 FLSIWI 106
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Frame = -3
Query: 290 ISGGKCRKILRYSIPSFVKYQ*KC-----LHANCSLTYPLDLSDCIAFFXVLD-HLEVRD 129
I K + L F K+ C + L +PL + CI +D + EV+D
Sbjct: 61 IKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRSKLRWPLLIIWCILIVFAIDKNFEVKD 120
Query: 128 LLEIWM 111
L IW+
Sbjct: 121 FLSIWI 126
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Frame = -3
Query: 290 ISGGKCRKILRYSIPSFVKYQ*KC-----LHANCSLTYPLDLSDCIAFFXVLD-HLEVRD 129
I K + L F K+ C + L +PL + CI +D + EV+D
Sbjct: 41 IKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRSKLRWPLLIIWCILIVFAIDKNFEVKD 100
Query: 128 LLEIWM 111
L IW+
Sbjct: 101 FLSIWI 106
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 LTYPLDLSDCIAFFXVLD-HLEVRDLLEIWM 111
L +PL + CI +D + EV+D L IW+
Sbjct: 76 LRWPLLIIWCILIVFAIDKNFEVKDFLSIWI 106
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 250 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 354
IEYL + PP + P L + E + G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +1
Query: 280 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAP 423
PP P + S T A APA A AY AP P
Sbjct: 58 PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 194 YPLDLSDCIAFFXVLDHL 141
+PL+ ++C+A +LDHL
Sbjct: 469 HPLEYNECVAAAQLLDHL 486
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 283 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 390
P I P ++ V TVR G+ PD P+ + R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,239
Number of Sequences: 5004
Number of extensions: 34338
Number of successful extensions: 127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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