Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_G01
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 95 2e-20
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 93 1e-19
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 93 2e-19
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 31 0.79
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 29 2.4
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 28 4.2
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 28 4.2
04_03_0718 + 19005460-19005767,19005854-19006370 28 4.2
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753... 28 5.6
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530... 27 7.4
04_01_0330 - 4369326-4370852 27 7.4
02_01_0462 + 3332464-3332470,3333606-3335806 27 7.4
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 27 9.8
05_03_0373 - 13194723-13195847,13196219-13196809 27 9.8
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 27 9.8
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 95.5 bits (227), Expect = 2e-20
Identities = 55/121 (45%), Positives = 70/121 (57%), Gaps = 13/121 (10%)
Frame = +1
Query: 169 MQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRG 342
MQS KS+ YV+E F+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + G
Sbjct: 46 MQSFKSKEYVRETFSWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSG 105
Query: 343 AVG-RPDAPARTAEDRSAY-----RRAPPAGAPHDKKADV--CPGSADVEFRG---GFGR 489
G RP P R DR + R P GAP D + P FRG GFGR
Sbjct: 106 PPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRGSRPGFGR 165
Query: 490 G 492
G
Sbjct: 166 G 166
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 75 VMVAKKDYHAPKHPDLEKIPNLQVIQ 152
V+ AKKDY+ KHP ++ +PNL+VI+
Sbjct: 20 VLYAKKDYNLAKHPKVD-VPNLEVIK 44
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 93.1 bits (221), Expect = 1e-19
Identities = 54/120 (45%), Positives = 68/120 (56%), Gaps = 8/120 (6%)
Frame = +1
Query: 169 MQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRG 342
MQS KS+ YV+E F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G
Sbjct: 46 MQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSG 105
Query: 343 AVG-RPDAPARTAEDRSAY-----RRAPPAGAPHDKKADVCPGSADVEFRGGFGRGRSAP 504
G RP P R DR + R P GAP D + G A EF+ F P
Sbjct: 106 PPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGE--KGGAPAEFQPSFRSSGGRP 163
Score = 35.5 bits (78), Expect = 0.028
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3
Query: 75 VMVAKKDYHAPKHPDLEKIPNLQVIQ 152
V+ AKKDY+ KHP ++ +PNLQVI+
Sbjct: 20 VLYAKKDYNLAKHPQID-VPNLQVIK 44
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 92.7 bits (220), Expect = 2e-19
Identities = 53/113 (46%), Positives = 67/113 (59%), Gaps = 8/113 (7%)
Frame = +1
Query: 169 MQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRG 342
MQS KS+ YV+E F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G
Sbjct: 46 MQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSG 105
Query: 343 AVG-RPDAPARTAEDRSAY-----RRAPPAGAPHDKKADVCPGSADVEFRGGF 483
G RP P R DR + R P GAP D + G A EF+ F
Sbjct: 106 PPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGE--KGGAPAEFQPSF 156
Score = 35.5 bits (78), Expect = 0.028
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3
Query: 75 VMVAKKDYHAPKHPDLEKIPNLQVIQ 152
V+ AKKDY+ KHP ++ +PNLQVI+
Sbjct: 20 VLYAKKDYNLAKHPQID-VPNLQVIK 44
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.7 bits (66), Expect = 0.79
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 368 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKI 264
A A G P P + VR L+ T GG CR +
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRGV 37
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +1
Query: 178 LKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR--RG 342
L S G WR F+ YLT E I YL +HL + +T RS+ + R +G
Sbjct: 611 LDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDESRKYKG 667
Query: 343 A---VGRPDAPARTAED 384
+ + +P PA + +D
Sbjct: 668 SLEYISQPSTPAGSNKD 684
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -3
Query: 254 SIPSFVKYQ*KCLHANCSLTYPLDLSDC-IAFFXVLDHLEVRDLLEIWMF 108
SIP+ + ++ +CL ++ SL + SDC + F L HL + L++ +F
Sbjct: 787 SIPTLLFFREQCLSSDGSLEFRAHESDCKMGFEFSLKHLASLEHLKVTIF 836
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +1
Query: 280 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVCPGSA 459
PPE L+ + RRG +P P A + + +PPA + +
Sbjct: 100 PPEAASEALRGAASPPERRRGGDRQPSHPTEAASEAPSGSASPPARRRGGDQQPPPAVAV 159
Query: 460 DVEFRGGFGRGRS 498
V GG G RS
Sbjct: 160 AVTSEGGVGPRRS 172
>04_03_0718 + 19005460-19005767,19005854-19006370
Length = 274
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +1
Query: 199 KEQFAWRHFYWYLTNEGIEYL--RIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPAR 372
+E AW F YL + Y + + L P+ +P + ++ R R + A
Sbjct: 201 QEAVAWMWFGRYLAVANLVYFSTNLLVFLIPKFLPRSFEKYFRM---------RDEVYAE 251
Query: 373 TAEDRSAYRRAPPAGAPHDKKAD 441
TAEDR A A KKAD
Sbjct: 252 TAEDRHAAAATVAAKPVESKKAD 274
>04_04_0674 +
27173948-27174188,27174704-27175260,27175310-27175399,
27175475-27175714,27175801-27176022,27176124-27176433,
27176528-27176847,27176906-27177021,27177133-27177227,
27177331-27177407,27177520-27177615
Length = 787
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +1
Query: 277 LPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 414
LPP + LKR V RR + PD R +Y R PPA
Sbjct: 510 LPPPVRSRPLKRPVDIRD-RRPVMSIPDRVRRLPPPERSYDRRPPA 554
>06_03_0948 -
26252230-26252460,26252567-26252614,26252703-26253041,
26253132-26253260,26255404-26255967
Length = 436
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 332 YVVVQLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMSALVQLMLNLEEVSEEVD 496
++ Q A L ++ L +D+L L L +RRL S LV L +++V +E++
Sbjct: 184 FLDAQAAELEIEAYPL-LDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIE 237
>04_01_0330 - 4369326-4370852
Length = 508
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 397 RRAPPAGAPHDKKADVCPGSADVEFRGGFG 486
RR P G HD D G+AD + GG G
Sbjct: 446 RRTPSYGHDHDDDDDNYDGNADADDNGGGG 475
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 179 LNLEDMLRNSSHGGIFTGI*QMRVLNTLEFSCTYLL 286
L +M RN +GGI I + V+ +L+ SC LL
Sbjct: 575 LQFLNMSRNVLYGGIPNDIGHLHVVESLDLSCNRLL 610
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 350 AGLMLQHEQLKIDQLIGAHHQLELLMIRRLMSALVQLMLNLEEVSEEVDL 499
AG + HE + ID L A + ELL + + L + N+E + E+++
Sbjct: 272 AGAVTSHESMDIDPLQLARYGEELLQRLKPLERLHGSIYNVELLKREIEI 321
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 289 IVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGA 420
++ + + E +RR + GR +R A++ RRA PAGA
Sbjct: 43 LISGAVSAAEPNERIRRSS-GRYIVASRRADEEDGLRRAVPAGA 85
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 340 GAVGRPDAPARTAEDRSAYRRAPP-AGAPHD 429
G GR R A D A RR P GAPHD
Sbjct: 105 GEAGRAGLRRRQAVDEVAARREEPQGGAPHD 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,940,950
Number of Sequences: 37544
Number of extensions: 239053
Number of successful extensions: 938
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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