Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_G01
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...    90   8e-19
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    27   8.8  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score = 90.2 bits (214), Expect = 8e-19
 Identities = 54/112 (48%), Positives = 63/112 (56%)
 Frame = +1

Query: 169 MQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAV 348
           ++SL SR  VKEQFAWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V     
Sbjct: 47  LKSLASRELVKEQFAWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-ED 105

Query: 349 GRPDAPARTAEDRSAYRRAPPAGAPHDKKADVCPGSADVEFRGGFGRGRSAP 504
             P A      DR AYR         +K  +  PG A V +R GFGRG   P
Sbjct: 106 RAPRAAQGEKGDREAYRT--------EKVTEAGPGGAPV-YRAGFGRGAPPP 148



 Score = 36.7 bits (81), Expect = 0.011
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 75  VMVAKKDYHAPKHPDLEKIPNLQVIQNXK 161
           V VAKKD++A  HP++E + NL+VI+  K
Sbjct: 20  VTVAKKDFNAKTHPNIEGVSNLEVIKTLK 48


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +1

Query: 340 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVCPGSADVEFRGGFG 486
           G VG P AP +  +   A   A P G P    A   PG A     G  G
Sbjct: 259 GNVGAPGAPGQVVDVPGAPGPAGPPGPPGPSGAPGHPGQAGSSLPGAPG 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,803,798
Number of Sequences: 27780
Number of extensions: 202698
Number of successful extensions: 687
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)