Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F24
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   3.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.2  
SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   5.5  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 60  KTRNRTLDRVNRRLRNGRATISKSHRVV 143
           K+R RT++ V RR+ +G AT  K+ + V
Sbjct: 413 KSRVRTMNEVERRIVDGCATFFKTSKYV 440


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 68  QQDIRQGQQTPQKRPGNDFQEPQSRQRP 151
           QQ   Q QQ PQ++     Q+PQ  Q+P
Sbjct: 168 QQQQSQPQQQPQQQQHQQPQQPQPPQQP 195


>SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = -1

Query: 458 SSVNDIISRS*FYKIISCCS*FEL*RKATFKW*LVILQRNK 336
           +++N  I +  F+K++ CC  ++L  +  F + + + + N+
Sbjct: 45  NNINQFIPKQPFFKLLDCCILYKLQTEDRFVYNMQVQRSNQ 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,431
Number of Sequences: 5004
Number of extensions: 32389
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)