Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F24
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z50070-3|CAA90400.1|  134|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever sho...    28   5.0  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    28   5.0  

>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 56  EEDAQQDIRQGQQTPQKRPGNDFQEPQSRQRPRN 157
           E+  + D+++G + P+K+P N  ++P+S + P N
Sbjct: 99  EKKIEDDVKKGPKQPRKKPENLPKKPESLKEPEN 132


>Z50070-3|CAA90400.1|  134|Caenorhabditis elegans Hypothetical
           protein F43G6.2 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 312 NTDKLRKIFISLEYYQLPFESRFSLQLKLAA 404
           N  K+ K F+ L Y+QLP+       L+L A
Sbjct: 47  NKGKINKFFLDLTYFQLPYPVSERAPLRLRA 77


>AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform b protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 56  EEDAQQDIRQGQQTPQK-RPGNDFQEPQSRQRPR 154
           EE+A+++++ G++TP   R GN +      QR R
Sbjct: 340 EEEAEEELKSGERTPTSVRSGNSYNPRVLYQRTR 373


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 56  EEDAQQDIRQGQQTPQK-RPGNDFQEPQSRQRPR 154
           EE+A+++++ G++TP   R GN +      QR R
Sbjct: 340 EEEAEEELKSGERTPTSVRSGNSYNPRVLYQRTR 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,505,661
Number of Sequences: 27780
Number of extensions: 179415
Number of successful extensions: 441
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)