Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F24
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    27   0.094
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    27   0.094
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    27   0.094
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 0.094
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 3   TRHQRKSAMSQQPPHRRQKKT-RNRTLDRVNRRLRNGRATISKSHRVVSGQETNSLFDSP 179
           +R + +++   +  +R+ ++T + R+ DR  R         SK H+++S    N  +++ 
Sbjct: 42  SREREQNSYKNEREYRKYRETSKERSRDRKEREK-------SKEHKIISSLSNNYNYNNN 94

Query: 180 QTFKFY*NRYLK 215
              K Y N Y K
Sbjct: 95  NYKKLYCNNYKK 106


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 0.094
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 3   TRHQRKSAMSQQPPHRRQKKT-RNRTLDRVNRRLRNGRATISKSHRVVSGQETNSLFDSP 179
           +R + +++   +  +R+ ++T + R+ DR  R         SK H+++S    N  +++ 
Sbjct: 42  SREREQNSYKNEREYRKYRETSKERSRDRKEREK-------SKEHKIISSLSNNYNYNNN 94

Query: 180 QTFKFY*NRYLK 215
              K Y N Y K
Sbjct: 95  NYKKLYCNNYKK 106


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 0.094
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 3   TRHQRKSAMSQQPPHRRQKKT-RNRTLDRVNRRLRNGRATISKSHRVVSGQETNSLFDSP 179
           +R + +++   +  +R+ ++T + R+ DR  R         SK H+++S    N  +++ 
Sbjct: 42  SREREQNSYKNEREYRKYRETSKERSRDRKEREK-------SKEHKIISSLSNNYNYNNN 94

Query: 180 QTFKFY*NRYLK 215
              K Y N Y K
Sbjct: 95  NYKKLYCNNYRK 106


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 295 HHVSILTRINYERYLFLWSITN 360
           H  +++  IN++R+ F+  +TN
Sbjct: 2   HFNNVIKYINFDRFFFIEGMTN 23


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 492 STCYLSQMDTPVI 454
           +TCYLS +D  V+
Sbjct: 316 ATCYLSHVDPDVV 328


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 492 STCYLSQMDTPVI 454
           +TCYLS +D  V+
Sbjct: 22  ATCYLSHVDPDVV 34


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 83  QGQQTPQKRPGNDFQEPQSRQR 148
           Q Q  PQ++     Q+PQ +Q+
Sbjct: 825 QAQAQPQQQQQQQQQQPQQQQQ 846


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,871
Number of Sequences: 438
Number of extensions: 2232
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)