Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F22
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    72   4e-14
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    72   4e-14
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   1.6  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   2.2  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   2.8  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   2.8  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.8  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   5.0  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   5.0  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   6.6  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    25   6.6  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    25   6.6  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    24   8.7  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 71.7 bits (168), Expect = 4e-14
 Identities = 36/82 (43%), Positives = 51/82 (62%)
 Frame = +3

Query: 21  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGYPAREAR 200
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+G PA   R
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 201 RAFSSLLPQEDSEARLWRCSLS 266
             F+ L   + +  R +   LS
Sbjct: 61  E-FARLSHNKKTVQRAYGGCLS 81



 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 32/49 (65%), Positives = 35/49 (71%)
 Frame = +1

Query: 181 IQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 327
           I   RP E +RL + KKTV+R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 54  IPALRPREFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 71.7 bits (168), Expect = 4e-14
 Identities = 36/82 (43%), Positives = 50/82 (60%)
 Frame = +3

Query: 21  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGYPAREAR 200
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+G PA   R
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 201 RAFSSLLPQEDSEARLWRCSLS 266
             F+ L   +    R +   LS
Sbjct: 61  E-FARLSHNQKKVQRAYGGCLS 81



 Score = 59.3 bits (137), Expect = 2e-10
 Identities = 30/49 (61%), Positives = 34/49 (69%)
 Frame = +1

Query: 181 IQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 327
           I   RP E +RL + +K V+R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 54  IPALRPREFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 42  RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 149
           RR  + N KS+++R    PG  L  +   KPK   R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 42  RRRLSYNTKSN-QRRIVRTPGGRLVY 116
           R+  SY T +   +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 267 QMREAAHRQSFLDRRTEDRESPKSATGQHKVWQKGRQV 380
           Q+RE A R+     +TE ++  + A  +++ W K ++V
Sbjct: 488 QVREQARRRRLEVEKTEPKKLARPAKIKNEAWSKQKEV 525


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 383 IYLAAFLPDFMLACCAFRTFTIFCSS 306
           I+L A + +  L+CC   T  I+CSS
Sbjct: 13  IHLKAIIEEPKLSCCHCETCRIWCSS 38


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 207 FSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATG 347
           FSS L    + +R ++  L++     HRQ F+  RTE+  + ++A+G
Sbjct: 22  FSSTLSNPLTYSRSYKRVLARWGIRVHRQRFVSPRTEE-AAARTASG 67


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 136 LGFLTYWYTKRPPGVRTILL 77
           +GFL Y+Y K P G R  +L
Sbjct: 133 VGFLPYFYVKAPVGFRPEML 152


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 21/109 (19%), Positives = 43/109 (39%)
 Frame = +3

Query: 60  NTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGYPAREARRAFSSLLPQEDSE 239
           N K N++  V     +  ++ V + KK    G   +  R   ARE  R     + Q +++
Sbjct: 458 NLKENKKTKVANASAQSKFEAVNQLKKF--LGSLGN--RSLNAREPLRVTLEDIEQIETK 513

Query: 240 ARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQHKVWQKGRQVNV 386
            R W    S     +   +      +D++  +  T   K+ Q  +++ +
Sbjct: 514 GRWWLVGASWNNVPSGDNTLSTEALQDKKKSEELTAHSKILQAAKKLRL 562


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 18/70 (25%), Positives = 26/70 (37%)
 Frame = +3

Query: 153  GQCKSKLRGYPAREARRAFSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESP 332
            G  K  LR    R   + F + L      AR   CS +   E  H Q F   +    E  
Sbjct: 1001 GVLKKNLRN-TIRNIVKVFLTTLGACGDVARNVTCSSTPNNETIHDQLFAVSKQISNELL 1059

Query: 333  KSATGQHKVW 362
             + +  H++W
Sbjct: 1060 PTTSSYHEIW 1069


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 209 ERSAGLAGWITA*FTLALTTPRDLLRFLNILVYQATSRSSYYSP 78
           +R AGL  W+     LAL     +  F+N L+  +++ S+Y +P
Sbjct: 106 KRVAGL--WVPPADALALAKDYSMTPFINALLEASSTPSTYATP 147


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 11  KLQNGAAAYIQTTFVLQHKVKPKENSTN 94
           KLQN    Y+    + Q KV PK   TN
Sbjct: 504 KLQNMPGTYVDKWTLDQEKVMPKNLKTN 531


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 303 QESSDDALLHAFVTENTSINALHCLLAVAETRTLCGPR 190
           Q++S+D++ H F + N  IN    L A+        PR
Sbjct: 79  QDASEDSINHMFESINPPINLAAFLTAMGSMLCRISPR 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,533
Number of Sequences: 5004
Number of extensions: 25818
Number of successful extensions: 86
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)