Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F22
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 75 2e-14
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 75 2e-14
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 74 4e-14
12_02_0690 - 22168299-22168393,22168478-22168640,22168716-221689... 28 3.7
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 28 3.7
12_02_0913 + 24246217-24247557 27 4.9
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 27 6.5
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 27 6.5
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475... 27 8.6
02_02_0233 + 8105765-8107840 27 8.6
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/55 (61%), Positives = 41/55 (74%)
Frame = +3
Query: 21 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGYP 185
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++G P
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIP 55
Score = 59.3 bits (137), Expect = 1e-09
Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
Frame = +1
Query: 193 RPAE--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 327
RPAE RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 58 RPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/55 (61%), Positives = 41/55 (74%)
Frame = +3
Query: 21 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGYP 185
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++G P
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIP 55
Score = 59.3 bits (137), Expect = 1e-09
Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
Frame = +1
Query: 193 RPAE--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 327
RPAE RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 58 RPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 74.1 bits (174), Expect = 4e-14
Identities = 33/55 (60%), Positives = 41/55 (74%)
Frame = +3
Query: 21 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGYP 185
MVQRLT+R+R SY TKSNQ R+V+TPGG+LVYQY KK P+C K++G P
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIP 55
Score = 59.3 bits (137), Expect = 1e-09
Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
Frame = +1
Query: 193 RPAE--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 327
RPAE RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 58 RPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>12_02_0690 -
22168299-22168393,22168478-22168640,22168716-22168913,
22169080-22169240,22169341-22169828,22169954-22170012,
22170301-22170418,22170519-22170628
Length = 463
Score = 27.9 bits (59), Expect = 3.7
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 99 GGRLVYQYVKKPKKIPRCGQCKSKLRGYPAREARRAFSSLLPQEDSEAR 245
G ++ ++ K ++IP CGQ S L G P E+ FSS QE S R
Sbjct: 416 GTSMLTDFIPK-QQIPTCGQYNSALAGQPF-ESTENFSSF--QEASNVR 460
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +3
Query: 90 RTPGGRLVYQYVKKPKKIPRCGQCKSKLRGYPAREARRAFSSLLPQEDSEARL 248
RT G + P+ PRC ++ R A ARR S P+ S R+
Sbjct: 233 RTGGSASDTRTTSTPRSAPRCASARAASRRSSAAPARRRASEPRPRVSSAMRV 285
>12_02_0913 + 24246217-24247557
Length = 446
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 154 VSARVNYAVIQPARPAERSRLCYRKKTVKRVYGGVLCH 267
++AR+N +++ P A+ LC ++ V RV V+ H
Sbjct: 341 LAARLNGSLVAPPPDADDGALCVARRDVGRVVPAVVFH 378
>06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 8 EKLQNGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIPV 121
E +GAA +IQT L K + + +T W +GI +
Sbjct: 1116 ESQVSGAAEHIQTGTNLLQKARFLQKNTRKWTCIGIVI 1153
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 153 GQCKSKLRGYPAREARRAFSSLLPQEDSEARLWRCS 260
GQC +++G +E A LL +D RL CS
Sbjct: 535 GQCAFEIKGVIQKEVCDALVGLLGDQDMAVRLAACS 570
>03_04_0153 +
17745473-17745889,17746120-17746272,17747307-17747512,
17747752-17747959
Length = 327
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +3
Query: 222 PQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQHKVWQKGRQ 377
P ED R W +++ + A L+R E+ +S +A + ++ R+
Sbjct: 80 PSEDEAQREWEAEMARRLKEAEEMEELERTAEELQSQAAAEAPDESEEEKRE 131
>02_02_0233 + 8105765-8107840
Length = 691
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 383 IYLAAFLPDFMLACCAFRTFTIFCSSIKKAL 291
+YL F PD ++ FT+ C I++AL
Sbjct: 529 MYLLLFQPDMLMPGTQQSLFTVACREIRRAL 559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,135,290
Number of Sequences: 37544
Number of extensions: 180567
Number of successful extensions: 496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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