Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F22
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...    74   5e-14
Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical p...    30   0.62 
Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical p...    30   0.62 
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas...    30   0.62 
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ...    30   0.62 
AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical ...    30   0.82 
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    30   0.82 
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    30   0.82 
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    30   0.82 
AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical...    29   1.9  
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    28   2.5  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   3.3  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   3.3  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   3.3  
AF000263-9|AAO21391.2|  184|Caenorhabditis elegans Hypothetical ...    28   3.3  
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF067947-11|AAO25994.1|  455|Caenorhabditis elegans Hypothetical...    27   7.7  
AF067947-10|AAC19232.2|  535|Caenorhabditis elegans Hypothetical...    27   7.7  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 35/58 (60%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
 Frame = +3

Query: 21  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGY-PAR 191
           M  R+T+RRRLSYNT SN++R+V+TPGGRLV QY+KK  +IP+C     KL G  PAR
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPAR 58



 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 27/48 (56%), Positives = 31/48 (64%)
 Frame = +1

Query: 181 IQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 324
           I PARP     L   ++TV R YGG L    VK+RI RAFL+EEQKIV
Sbjct: 54  ITPARPIALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIV 101


>Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical
           protein R10E11.3b protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 267 VTENTSINALHCLLAVAETRTLCG 196
           V +NTSI+  HCL   +ET TLCG
Sbjct: 219 VEQNTSIS--HCLRVFSETETLCG 240


>Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical
           protein R10E11.3a protein.
          Length = 426

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 267 VTENTSINALHCLLAVAETRTLCG 196
           V +NTSI+  HCL   +ET TLCG
Sbjct: 231 VEQNTSIS--HCLRVFSETETLCG 252


>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
           protein.
          Length = 1276

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 57  YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGYP 185
           Y+  SNQ + V    G+L +   K P  +P CG  KSK  GYP
Sbjct: 475 YSGASNQLKTV----GQLHWVGGKPPTDLPICGYDKSKCPGYP 513


>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
           protein T01A4.1c protein.
          Length = 1276

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 57  YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGYP 185
           Y+  SNQ + V    G+L +   K P  +P CG  KSK  GYP
Sbjct: 475 YSGASNQLKTV----GQLHWVGGKPPTDLPICGYDKSKCPGYP 513


>AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical
           protein W03G9.5 protein.
          Length = 488

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 23/83 (27%), Positives = 35/83 (42%)
 Frame = +3

Query: 48  RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGYPAREARRAFSSLLPQ 227
           R   + K  +R I RTP    + Q  K  KK       +  L+   AR ARRA    +  
Sbjct: 391 RSETSKKVKRRYIARTPSAHKIEQIEKNWKKKEEEANKEKLLKN--ARAARRAKEDFIVP 448

Query: 228 EDSEARLWRCSLSQMREAAHRQS 296
           ED+  +  +   +Q+  A   +S
Sbjct: 449 EDNTVQKRKLESTQLSSAVSTKS 471


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +3

Query: 72  NQRRIVRTPGGRLVYQYVKKPK-KIPRCGQCKSKLRGYPAREARRAFSSLLPQEDSEARL 248
           N+ +    PG  ++     +P+  IPR G+ KS      AREARR+         S +R 
Sbjct: 16  NEEKKQPPPGFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRS--------RSRSRD 67

Query: 249 WRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQH 353
            R   S+ R  + R++  DRR +DR S +     H
Sbjct: 68  RRGGRSRSRSPSRRRTSRDRR-DDRSSRRRRDRSH 101


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +3

Query: 72  NQRRIVRTPGGRLVYQYVKKPK-KIPRCGQCKSKLRGYPAREARRAFSSLLPQEDSEARL 248
           N+ +    PG  ++     +P+  IPR G+ KS      AREARR+         S +R 
Sbjct: 74  NEEKKQPPPGFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRS--------RSRSRD 125

Query: 249 WRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQH 353
            R   S+ R  + R++  DRR +DR S +     H
Sbjct: 126 RRGGRSRSRSPSRRRTSRDRR-DDRSSRRRRDRSH 159


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +3

Query: 72  NQRRIVRTPGGRLVYQYVKKPK-KIPRCGQCKSKLRGYPAREARRAFSSLLPQEDSEARL 248
           N+ +    PG  ++     +P+  IPR G+ KS      AREARR+         S +R 
Sbjct: 75  NEEKKQPPPGFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRS--------RSRSRD 126

Query: 249 WRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQH 353
            R   S+ R  + R++  DRR +DR S +     H
Sbjct: 127 RRGGRSRSRSPSRRRTSRDRR-DDRSSRRRRDRSH 160


>AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical
           protein T08B2.5d protein.
          Length = 163

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +3

Query: 72  NQRRIVRTPGGRLVYQYVKKPK-KIPRCGQCKSKLRGYPAREARRAFSSLLPQEDSEARL 248
           N+ +    PG  ++     +P+  IPR G+ KS      AREARR+         S +R 
Sbjct: 74  NEEKKQPPPGFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRS--------RSRSRD 125

Query: 249 WRCSLSQMREAAHRQSFLDRRTEDRES 329
            R   S+ R  + R++  DRR +DR S
Sbjct: 126 RRGGRSRSRSPSRRRTSRDRR-DDRSS 151


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 25/71 (35%), Positives = 34/71 (47%)
 Frame = +3

Query: 141 IPRCGQCKSKLRGYPAREARRAFSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTED 320
           IPR G+ KS      AREARR+         S +R  R   S+ R  + R++  DRR +D
Sbjct: 12  IPRSGENKSSRSPSWAREARRS--------RSRSRDRRGGRSRSRSPSRRRTSRDRR-DD 62

Query: 321 RESPKSATGQH 353
           R S +     H
Sbjct: 63  RSSRRRRDRSH 73


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 164  LALTTPRDLLRFLNILVYQATS 99
            L LTTPRD L  +  L+Y AT+
Sbjct: 4721 LLLTTPRDFLPKIGTLIYSATT 4742


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 164  LALTTPRDLLRFLNILVYQATS 99
            L LTTPRD L  +  L+Y AT+
Sbjct: 4766 LLLTTPRDFLPKIGTLIYSATT 4787


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 164  LALTTPRDLLRFLNILVYQATS 99
            L LTTPRD L  +  L+Y AT+
Sbjct: 4766 LLLTTPRDFLPKIGTLIYSATT 4787


>AF000263-9|AAO21391.2|  184|Caenorhabditis elegans Hypothetical
           protein T08B2.5e protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 96  PGGRLVYQYVKKPK-KIPRCGQCKSKLRGYPAREARRAFSSLLPQEDSEARLWRCSLSQM 272
           PG  ++     +P+  IPR G+ KS      AREARR+         S +R  R   S+ 
Sbjct: 103 PGFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRS--------RSRSRDRRGGRSRS 154

Query: 273 REAAHRQSFLDRRTEDRES 329
           R  + R++  DRR +DR S
Sbjct: 155 RSPSRRRTSRDRR-DDRSS 172


>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
           protein T01A4.1a protein.
          Length = 1217

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 57  YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKL-RGYP 185
           Y+  SNQ + V    G+L +   K P  +P CG  KSK  +GYP
Sbjct: 428 YSGASNQLKTV----GQLHWVGGKPPTDLPICGYDKSKCPQGYP 467


>Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical
           protein D1081.4 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 350 LACCAFRTFTIFCSSIKKALTMRCFTHL*QRTPP*TRFTVFLR*QRRER 204
           L+CCA ++  + C ++++     CF  +  RT P      F   +RRER
Sbjct: 142 LSCCASKS-NMECCALREEEVRACFHEILLRTRPNLNIQGFELRKRRER 189


>AF067947-11|AAO25994.1|  455|Caenorhabditis elegans Hypothetical
           protein T10B5.5b protein.
          Length = 455

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 255 TSINALHCLLAVAETRTLCGPRGLDNRVVYS 163
           ++INA  C +     RT  GPRGLD  +V S
Sbjct: 24  SNINA--CQVVADSIRTTLGPRGLDKLIVDS 52


>AF067947-10|AAC19232.2|  535|Caenorhabditis elegans Hypothetical
           protein T10B5.5a protein.
          Length = 535

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 255 TSINALHCLLAVAETRTLCGPRGLDNRVVYS 163
           ++INA  C +     RT  GPRGLD  +V S
Sbjct: 24  SNINA--CQVVADSIRTTLGPRGLDKLIVDS 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,379,568
Number of Sequences: 27780
Number of extensions: 149065
Number of successful extensions: 480
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)