Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F20
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   146   6e-36
Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical pr...    33   0.16 
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z92829-16|CAE46671.1|  284|Caenorhabditis elegans Hypothetical p...    27   5.8  
Z92804-6|CAE46675.1|  284|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  146 bits (355), Expect = 6e-36
 Identities = 62/90 (68%), Positives = 76/90 (84%)
 Frame = +3

Query: 18  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 197
           MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR   GIW+C +C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60

Query: 198 KRTVAGGAWVFSTTAASSCRSAVRRLREVK 287
            + VAGGA+V+ T  A++ RS +RRLR++K
Sbjct: 61  HKVVAGGAYVYGTVTAATVRSTIRRLRDLK 90


>Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical
           protein R09E10.1 protein.
          Length = 294

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 171 HMNVSWHPCRRMSKCISRVELLPSF*PFYV 82
           ++N   +  RR SKC  RVEL PS+  FY+
Sbjct: 261 YVNAKIYASRRNSKCFRRVELFPSYIRFYL 290


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 177 CLHMNVSWHPCR--RMSKCIS 121
           CLH   S HPCR  RM KCI+
Sbjct: 42  CLHRLPSSHPCRHCRMEKCIA 62


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 114 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 197
           ++ KY C+ C      R   G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254


>Z92829-16|CAE46671.1|  284|Caenorhabditis elegans Hypothetical
           protein K05D4.9 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 274 YVKSSKP*FKKINK-IPQFFVSFYINTNEYAGTN*SYYFDE 393
           ++K + P   K  K IP+F+ ++ +  NEY  T   YY+ +
Sbjct: 118 FIKLNSPSPMKDEKLIPEFWEAYCLKPNEYTYTGPHYYYTD 158


>Z92804-6|CAE46675.1|  284|Caenorhabditis elegans Hypothetical
           protein K05D4.9 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 274 YVKSSKP*FKKINK-IPQFFVSFYINTNEYAGTN*SYYFDE 393
           ++K + P   K  K IP+F+ ++ +  NEY  T   YY+ +
Sbjct: 118 FIKLNSPSPMKDEKLIPEFWEAYCLKPNEYTYTGPHYYYTD 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,558,322
Number of Sequences: 27780
Number of extensions: 202088
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)