Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F20
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.59 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.6  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 100 FLTILRKDAP*RVPYLPVIP 41
           FL ++    P  VPY PVIP
Sbjct: 639 FLVVISSSNPLNVPYGPVIP 658


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +3

Query: 60  GTRYGASLRKMVKKMEVTQHAKYTCSFCGK 149
           G  +  S +  V     T    YTC  CGK
Sbjct: 210 GKGFTCSKQLKVHTRTHTGEKPYTCDICGK 239


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 67  RVPYLPVIPTFLV 29
           R+P LP+IP + V
Sbjct: 784 RIPILPMIPVYCV 796


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 150 PCRRMSKCISRVEL 109
           PCR  ++CI+R+ L
Sbjct: 478 PCRCHARCIARLAL 491


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 150 PCRRMSKCISRVEL 109
           PCR  ++CI+R+ L
Sbjct: 478 PCRCHARCIARLAL 491


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
          protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +2

Query: 56 IWHTLWCIF 82
          +WH LW +F
Sbjct: 1  MWHFLWIVF 9


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,731
Number of Sequences: 438
Number of extensions: 2864
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)