Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F18
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    30   0.22 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    29   0.50 
SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces pombe...    27   1.1  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   2.0  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   4.6  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    25   4.6  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   4.6  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   8.1  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   8.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.1  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   8.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   8.1  

>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -2

Query: 414 CSLLFSHSSLSYACVSSPSDQTYRNALLCPSL*TFSFYVFYRPFVG 277
           C LLF++S LS++  ++  D+TY  +L   S  +   YV +   +G
Sbjct: 6   CLLLFAYSLLSFSLTAATIDETYDESLFIKSFSSRYSYVSFAFEIG 51


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +2

Query: 29  MKNVNENIRNRTDNADTADEFMRMTIRRQSEELDSRDIEN---NVFVHDNSNIQLTIDND 199
           +KNV  N  +RT   +  DE +  T++    E    D EN   N F+  N+ IQ    + 
Sbjct: 373 LKNVFINTYDRTRLVNDYDEIINFTLKDVLGERSVMDQENSLTNYFLLQNTAIQYLSISF 432

Query: 200 FQLGDGFEYKKI 235
           F       YKK+
Sbjct: 433 FMRQQSKAYKKL 444


>SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 120

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 98  MTIRRQSEELDSRDIENNVFVHDNSNIQLTIDNDFQL 208
           M+    S E D  D+EN VF   NS++     +DF +
Sbjct: 1   MSSNSPSLETDVDDVENIVFQFQNSSLDFQSSDDFSI 37


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 107 RRQSEELDSRDIENNVFVHDNSNIQLTIDNDFQ 205
           R    E  +R +   + V D+ N+QL + N+FQ
Sbjct: 113 RAHRREKAARKLLRRILVSDSPNMQLVVPNNFQ 145


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 441 WKVLTSLAACS--LLFSHSSLSYACVSSPSDQTYRNAL 334
           W++L+SL A    +L  HS + + C+ S S Q   +AL
Sbjct: 363 WEMLSSLLAIDFDVLLPHSKILWECIKSVSHQDDIHAL 400


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 255 DLLHLPEIFLYSNPSP 208
           DL+ +PEIF  SNP P
Sbjct: 161 DLVSVPEIFEQSNPKP 176


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 226 QEDLRKVEKILMYHKMSTNKRSIKNIKRKSLK 321
           Q  L+++EKIL  +    NK+S   ++R+  K
Sbjct: 24  QNPLKELEKILERNNKQKNKKSRNQVRREKKK 55


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 41  NENIRNRTDNADTADEFMRMTIRRQSEELDSRDIENNVFVHD 166
           +EN+ N  +   +  +  R +  RQSEE+ S   EN VF  D
Sbjct: 451 SENVSNNREELPSFRK--RSSSSRQSEEIASLQAENAVFSSD 490


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 77  TADEFMRMTIRRQSEELDSRDIENNVFVHDNSNI--QLTIDNDFQLGDGFEYKKIS 238
           TA  FMR      +++ D  D  +  F+ + +    QL  DND  LGD F    IS
Sbjct: 381 TAFGFMRSNTSTFNQKCD--DFSSASFMKEKTEFEEQLQEDNDHSLGDLFSKINIS 434


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 235 LRKVEKILMYHKMSTNKRSIKNIKRKSLKRRTKESIPIGLIG 360
           LRK++ I + H  S +   + N+ +   K  T  S+ I +IG
Sbjct: 462 LRKLKAIFITHLHSDHYLGLLNVLQAWNKANTNNSMHINIIG 503


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 399 SHSSLSYACVSSPSDQTYRNALLCPSL 319
           SHS L  A +S+ +D   +  + CPSL
Sbjct: 515 SHSKLRDAIISTLNDVFSQTIIFCPSL 541


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = +2

Query: 35  NVNENIRNRTDNADTA--DEFMRMTIRRQSEE-----LDSRDIENNVFVHDNSNIQLTID 193
           N+  N  N  D + +A  D+ ++  I R   E     L+ +    N F+HD+S+   T++
Sbjct: 25  NIGFNKNNTPDYSSSASSDQLLKNDINRHEMERRIAFLNRKQALFNAFMHDSSSSLNTME 84

Query: 194 NDFQLGDG 217
           ++ +  +G
Sbjct: 85  SNIEKVNG 92


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 265 HKMSTNKRSIKNIKRKSL 318
           +KMST K+S + IK KSL
Sbjct: 859 NKMSTPKKSFEQIKSKSL 876


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,155
Number of Sequences: 5004
Number of extensions: 26670
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)