Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F18
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0114 + 9294747-9294788,9294883-9294996,9295066-9295173,929...    27   6.1  
07_03_1133 - 24199643-24200422,24200786-24200968,24201241-242013...    27   6.1  
03_02_0110 - 5678057-5678794,5679279-5679470,5679971-5680087,568...    27   6.1  
02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642...    27   6.1  
06_01_0946 + 7289182-7289226,7291366-7291441,7291542-7291655,729...    27   8.1  

>10_05_0114 +
           9294747-9294788,9294883-9294996,9295066-9295173,
           9295774-9296145,9296584-9296652,9296754-9296825,
           9297070-9297198,9297690-9297770,9298622-9298807,
           9299135-9299860
          Length = 632

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -2

Query: 312 FSFYVFYRPFVGR 274
           F+FYVF+ PFVGR
Sbjct: 26  FAFYVFFVPFVGR 38


>07_03_1133 -
           24199643-24200422,24200786-24200968,24201241-24201321,
           24201439-24201567,24201814-24201885,24201970-24202038,
           24202130-24202513,24203813-24203926,24204033-24204074
          Length = 617

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 312 FSFYVFYRPFVGRHLVVHQDL 250
           F+FYVF+ PFVG+   V QD+
Sbjct: 26  FAFYVFFAPFVGKK--VFQDV 44


>03_02_0110 -
           5678057-5678794,5679279-5679470,5679971-5680087,
           5680331-5680402,5680444-5680569,5681086-5681445,
           5681944-5682057,5682158-5682199
          Length = 586

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -2

Query: 312 FSFYVFYRPFVGR 274
           F+FYVF+ PFVGR
Sbjct: 26  FAFYVFFVPFVGR 38


>02_02_0654 -
           12662931-12663200,12663296-12663550,12664097-12664268,
           12664354-12664581,12664727-12664860,12665018-12665101,
           12665332-12665538,12665641-12665973,12666175-12666281,
           12666439-12666593,12666778-12666810,12666924-12666972,
           12667152-12667312,12667413-12668313,12668391-12668481,
           12668558-12668749
          Length = 1123

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -2

Query: 309 SFYVFYRPFVGRHLVVHQDLLHLPEIFLYSNPSPNWKSLSIVNC 178
           SFY+  +    +H+   +  +H   +    N   NW+SL  V C
Sbjct: 227 SFYIGQQMMKEQHIPFEKSKIHPAALTTMKNALSNWESLKAVLC 270


>06_01_0946 +
           7289182-7289226,7291366-7291441,7291542-7291655,
           7291881-7292447,7293047-7293792
          Length = 515

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 232 DLRKVEKILMYHKMSTNKRSIKNIKRKSLKRRTKE 336
           D +K+EK  +YH+   N R  +N+++  L ++ +E
Sbjct: 236 DDQKIEKFYLYHEGKANYRDDQNMEKFYLYKKGEE 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,012,063
Number of Sequences: 37544
Number of extensions: 149434
Number of successful extensions: 402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)