Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F18
         (490 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74739-3|CAA98995.2| 3085|Homo sapiens 214K23.1 (breast cancer 2...    30   4.9  
X95152-1|CAA64484.1| 3418|Homo sapiens brca2 protein.                  30   4.9  
U43746-1|AAB07223.1| 3418|Homo sapiens BRCA2 protein.                  30   4.9  
DQ897648-1|ABI74674.1| 2649|Homo sapiens breast and ovarian canc...    30   4.9  
BC020832-1|AAH20832.1|  236|Homo sapiens RAB, member of RAS onco...    30   4.9  
AY436640-1|AAQ97181.1| 3418|Homo sapiens breast cancer 2, early ...    30   4.9  
AL445212-4|CAI40479.1| 3418|Homo sapiens breast cancer 2, early ...    30   4.9  
AL137247-6|CAI13195.1| 3418|Homo sapiens breast cancer 2, early ...    30   4.9  

>Z74739-3|CAA98995.2| 3085|Homo sapiens 214K23.1 (breast cancer 2,
            early onset, protein) protein.
          Length = 3085

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 35   NVNENIRNRTDNADTADEFMRMTIRRQSEELDSRDIENNVFVHDNSNIQLTIDNDFQL 208
            N N N+R    N +      ++T+   SEEL S +  N VF   N    L + N  +L
Sbjct: 852  NQNTNLRVIQKNQEETTSISKITVNPDSEELFSDNENNFVFQVANERNNLALGNTKEL 909


>X95152-1|CAA64484.1| 3418|Homo sapiens brca2 protein.
          Length = 3418

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 35   NVNENIRNRTDNADTADEFMRMTIRRQSEELDSRDIENNVFVHDNSNIQLTIDNDFQL 208
            N N N+R    N +      ++T+   SEEL S +  N VF   N    L + N  +L
Sbjct: 852  NQNTNLRVIQKNQEETTSISKITVNPDSEELFSDNENNFVFQVANERNNLALGNTKEL 909


>U43746-1|AAB07223.1| 3418|Homo sapiens BRCA2 protein.
          Length = 3418

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 35   NVNENIRNRTDNADTADEFMRMTIRRQSEELDSRDIENNVFVHDNSNIQLTIDNDFQL 208
            N N N+R    N +      ++T+   SEEL S +  N VF   N    L + N  +L
Sbjct: 852  NQNTNLRVIQKNQEETTSISKITVNPDSEELFSDNENNFVFQVANERNNLALGNTKEL 909


>DQ897648-1|ABI74674.1| 2649|Homo sapiens breast and ovarian cancer
            susceptibility protein 2 truncated variant protein.
          Length = 2649

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 35   NVNENIRNRTDNADTADEFMRMTIRRQSEELDSRDIENNVFVHDNSNIQLTIDNDFQL 208
            N N N+R    N +      ++T+   SEEL S +  N VF   N    L + N  +L
Sbjct: 852  NQNTNLRVIQKNQEETTSISKITVNPDSEELFSDNENNFVFQVANERNNLALGNTKEL 909


>BC020832-1|AAH20832.1|  236|Homo sapiens RAB, member of RAS
           oncogene family-like 3 protein.
          Length = 236

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +1

Query: 244 VEKILMYHKMSTNKRSIKNIKRKSLKRRTKESIPIGLI 357
           V  I+  H + TNK+S +N++R SL+   ++ +P G++
Sbjct: 88  VNGIIFVHDL-TNKKSSQNLRRWSLEALNRDLVPTGVL 124


>AY436640-1|AAQ97181.1| 3418|Homo sapiens breast cancer 2, early onset
            protein.
          Length = 3418

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 35   NVNENIRNRTDNADTADEFMRMTIRRQSEELDSRDIENNVFVHDNSNIQLTIDNDFQL 208
            N N N+R    N +      ++T+   SEEL S +  N VF   N    L + N  +L
Sbjct: 852  NQNTNLRVIQKNQEETTSISKITVNPDSEELFSDNENNFVFQVANERNNLALGNTKEL 909


>AL445212-4|CAI40479.1| 3418|Homo sapiens breast cancer 2, early onset
            protein.
          Length = 3418

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 35   NVNENIRNRTDNADTADEFMRMTIRRQSEELDSRDIENNVFVHDNSNIQLTIDNDFQL 208
            N N N+R    N +      ++T+   SEEL S +  N VF   N    L + N  +L
Sbjct: 852  NQNTNLRVIQKNQEETTSISKITVNPDSEELFSDNENNFVFQVANERNNLALGNTKEL 909


>AL137247-6|CAI13195.1| 3418|Homo sapiens breast cancer 2, early onset
            protein.
          Length = 3418

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 35   NVNENIRNRTDNADTADEFMRMTIRRQSEELDSRDIENNVFVHDNSNIQLTIDNDFQL 208
            N N N+R    N +      ++T+   SEEL S +  N VF   N    L + N  +L
Sbjct: 852  NQNTNLRVIQKNQEETTSISKITVNPDSEELFSDNENNFVFQVANERNNLALGNTKEL 909


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,585,638
Number of Sequences: 237096
Number of extensions: 852481
Number of successful extensions: 1908
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1908
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)