Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F18
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    28   4.2  
U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body prot...    27   7.3  
AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical ...    27   7.3  
U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical p...    27   9.7  
AC024853-4|AAK68586.1|  746|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -2

Query: 348 YRNALLCPSL*TFSFYVFYRPFVGRHLVVHQDLLHLPEIFLYSNPSPNWKSLSIVNCIL 172
           +R +L+CP    F F++F   F+  H+V+H   +    +    N   N + L I   +L
Sbjct: 181 FRASLVCP----FIFFIFMLSFLYMHIVIHMRKISRDPLLNNKNNRRNNRKLLITILLL 235


>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = +2

Query: 122 ELDSRDIENNV-------FVHDNSNIQLTIDNDFQLGDGFEYKKIS 238
           ELD  D+  NV          DN NI L    D++L    +YKK++
Sbjct: 277 ELDELDVSGNVPDGLTAEEEEDNPNIDLITKTDYELRSNSQYKKLN 322


>U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body protein
           1, isoform b protein.
          Length = 369

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 221 RIRRPIGNHYQSSTVY*NYHEQIHYSQYLSNPVP 120
           R    + +HY SS  Y NY EQ +   Y +  VP
Sbjct: 5   RYSSSVSDHYDSSDEYDNYSEQNYEYVYKTRLVP 38


>AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical
           protein Y6E2A.8 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 235 LRKVEKILMYHKMSTNKRSIKNIKRKSLKRRTKES 339
           LRK+EK L   K  T KR+ K +K   LK++ + S
Sbjct: 312 LRKIEKDLKMRKRETMKRAEK-MKEAELKKKKESS 345


>U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical
           protein F41G3.3 protein.
          Length = 577

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
 Frame = -3

Query: 251 FSTFRRSSCTRIRRPIGNHYQS--STVY*NYHEQIHYSQYLSNPVPRFDVLSSFA*IHQP 78
           F+T  R    R ++   +HY    +  Y NY  +  Y    +N VP        A  H P
Sbjct: 36  FNTMDRRRDPRYKQQEAHHYDDRYNNTYDNYDYEEDYGNQYANTVPHHHHPHPHAHPHHP 95

Query: 77  YQH 69
             H
Sbjct: 96  EDH 98


>AC024853-4|AAK68586.1|  746|Caenorhabditis elegans Hypothetical
           protein Y71F9AR.3 protein.
          Length = 746

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 239 RRSSCTRIRRPIGNHYQSSTVY*NYHE--QIHYSQYLSNPVPR 117
           RRSS   I   I     S TVY NYHE  ++ ++ +L + +PR
Sbjct: 567 RRSSPLHIGATISILDSSITVYPNYHEYLKLLFTHHLPDLLPR 609


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,046,946
Number of Sequences: 27780
Number of extensions: 141631
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)