Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F18
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   4.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 291 RPFVGRHLVVHQDLLHLPEIFLYSNPSPNW 202
           R F+G     H  L+ +PE   Y     NW
Sbjct: 517 RIFIGPKYDSHHKLIEIPEDLKYFYEIDNW 546


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 291 RPFVGRHLVVHQDLLHLPEIFLYSNPSPNW 202
           R F+G     H  L+ +PE   Y     NW
Sbjct: 517 RIFIGPKYDSHHKLIEIPEDLKYFYEIDNW 546


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 32  KNVNENIRNRTDNADTADEFMR-MTIRRQSEELDSRDIENNVFVHDNSNIQLTIDNDFQL 208
           +N  +N +      +T+ E  R  T R +S E       +N  +H+N+N +   +N +  
Sbjct: 47  QNSYKNEKEYRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNY 106

Query: 209 GDGFEYKKI 235
            +    KK+
Sbjct: 107 NNNNYNKKL 115


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 270 LVVHQDLLHLPEIFLYSNPSPNWKSLSIVNCIL 172
           L V  + + LP+I LY+N   N++   +   IL
Sbjct: 95  LHVPSEHIWLPDIVLYNNADGNYEVTIMTKAIL 127


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 167 YHEQIHYSQYLSNPVP 120
           YH+Q H+ Q  S+  P
Sbjct: 9   YHQQFHHQQLFSSANP 24


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 270 LVVHQDLLHLPEIFLYSNPSPNWK 199
           L V  + + LP+I LY+N   N++
Sbjct: 108 LYVPSENIWLPDIVLYNNADGNYE 131


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 270 LVVHQDLLHLPEIFLYSNPSPNWKSLSIVNCIL 172
           L V  + + LP+I LY+N    +   ++   IL
Sbjct: 95  LYVPSEHIWLPDIVLYNNADGEYGVTTMTKAIL 127


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 200 NHYQSSTVY*NYHEQIHYSQYLSNPVP 120
           N+Y ++  Y   +  I+Y + +  PVP
Sbjct: 315 NNYYNNNNYKKLYYNINYIEQIPIPVP 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,024
Number of Sequences: 438
Number of extensions: 2107
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)