Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F17
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0086 + 15916555-15916905,15917236-15917262 31 0.53
02_05_1004 + 33444248-33444847 31 0.70
01_04_0090 - 15940935-15941438 30 0.93
10_02_0159 + 6020441-6020971 29 1.6
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 29 1.6
11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381... 29 2.8
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 3.7
02_05_0263 - 27257150-27259213 27 6.5
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 27 8.7
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 27 8.7
>01_04_0086 + 15916555-15916905,15917236-15917262
Length = 125
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 321 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYA 443
S R GENL+W S +A++SW E DY YA
Sbjct: 72 SNRNNLGENLFWGSAGGDW---TAASAVQSWVGEKSDYDYA 109
>02_05_1004 + 33444248-33444847
Length = 199
Score = 30.7 bits (66), Expect = 0.70
Identities = 21/90 (23%), Positives = 36/90 (40%)
Frame = +3
Query: 234 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 413
+ W L Q + + G+F GEN++W + +A++ W
Sbjct: 79 LAWSPRLESYARWWAAQRRGDCALRHSFPEGQFALGENIFWGGAGGA---WRPGDAVKDW 135
Query: 414 FNEYKDYKYAPLKQSDFDKSKPKIGHYTQM 503
E DY YA ++ + + GHYTQ+
Sbjct: 136 AAEGVDYSYA----ANACAAGRECGHYTQI 161
>01_04_0090 - 15940935-15941438
Length = 167
Score = 30.3 bits (65), Expect = 0.93
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 339 GENLYWYST-TDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQM 503
GEN++W S D T +A+ SW +E K Y YA S+ + GHYTQ+
Sbjct: 81 GENIFWGSAGADWT----AADAVRSWVDEKKYYNYA----SNSCAAGKVCGHYTQV 128
>10_02_0159 + 6020441-6020971
Length = 176
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 339 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGHYTQM 503
GEN++W S + + +A+ SW E K+Y Y + D K GHYTQ+
Sbjct: 82 GENIFWGSAGRAW---SAADAVASWVGEKKNYHY---DTNTCDPGK-VCGHYTQV 129
>02_01_0418 -
3059575-3061279,3061915-3061973,3064270-3064353,
3064395-3064559
Length = 670
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 91 VLDTSIVNLY*TCHANKSKISSTDTIIGDNYWLRVRYQDTLLQ 219
+ + S ++ T HA KS + T IG+N+W V QD ++
Sbjct: 356 ITENSFSDIAKTLHAFKSSRNLTTLFIGENFWGEVIPQDETIE 398
>11_04_0438 -
17737040-17737122,17737373-17737496,17737897-17738182,
17738265-17738397,17738742-17738953,17739455-17739816,
17739907-17739937,17744738-17745111
Length = 534
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 336 TGENLYWYSTTDSTYKLNVDNAME-SWFNEYKDYKYAPLKQSDFDKSK 476
T + Y + TD K+ V+ M + N+ D + PLK +FD+SK
Sbjct: 238 TNDKSYTFGFTDQGCKIFVEMFMAVKYVNDLYDDEQIPLKALNFDESK 285
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 291 NFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 413
N NPDK++G + E + T DS +++ AME+W
Sbjct: 406 NASNPDKSVGGLQDAVVETKHSNGTRDSRLHWDLNVAMEAW 446
>02_05_0263 - 27257150-27259213
Length = 687
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 88 YVLDTSIVNLY*TCHANKSKISS 156
Y+L+T IVNLY C A +S +++
Sbjct: 168 YILETCIVNLYTRCGAYQSAVAT 190
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 98 SNTYDHCQNKKRAYGHCSVVCYHXTIH 18
S + HC N Y CS C+ IH
Sbjct: 45 SRVHPHCINASNPYHACSNFCFRRIIH 71
>02_03_0141 - 15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 306 DKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAP 446
D G G + EN Y T D++ L++ + + WF+EY ++ P
Sbjct: 1241 DSPAGVG-YSYSENEDDYVTNDTSRVLDLYDFLSKWFSEYLEFLSNP 1286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,504
Number of Sequences: 37544
Number of extensions: 259574
Number of successful extensions: 480
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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