Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F16
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063007-2|AAC16433.1|  583|Caenorhabditis elegans Hypothetical ...    29   3.2  
U40412-1|AAA81395.1|  570|Caenorhabditis elegans Temporarily ass...    28   4.2  
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U67949-2|AAB07560.2|  368|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF039046-1|AAB94210.1|  458|Caenorhabditis elegans F-box a prote...    27   9.8  

>AF063007-2|AAC16433.1|  583|Caenorhabditis elegans Hypothetical
           protein R119.7 protein.
          Length = 583

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +1

Query: 40  DLEIKLFSTSPPATNSDRRSFFDEKSESAVNRCTIT---SYDTVNSAIVCNNVGSSVKMD 210
           + E  +F T PP T      +  E +E+A  +C      +YD +N++ + +N  S+    
Sbjct: 458 ETEDDVFETGPPPT------YLSEGNENAEKKCVEQPKINYDDINNSRLPSNSHSAAPNS 511

Query: 211 GKKCEEFSDVGCARQLSLPA 270
            KK   F +    R  S+P+
Sbjct: 512 EKKHFVFPEYPMCRHSSVPS 531


>U40412-1|AAA81395.1|  570|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 257 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 58  FSTSPPATNSDRRSFFDEKSESA 126
           FS +PPA N  ++  FD  SESA
Sbjct: 446 FSQAPPAVNVSKKDVFDPFSESA 468


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 73  PATNSDRRSFFDEKSESAVNRCTITSYDTVNSAIVCNNV 189
           P+T++D  S     + S  +RC++ S++T+N A   N+V
Sbjct: 434 PSTSADLNSGV-MNATSTFSRCSLASFNTINGAPAGNSV 471


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -3

Query: 242 PTSENSSHFFPSILTLEPTLLQTIALF 162
           PTS  SS FF  +LT    LLQTI +F
Sbjct: 363 PTSLPSSLFFWKLLTFLYLLLQTIVIF 389


>Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical
           protein K10D11.2 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 6   QEFGTRDQWASRLGN*IIFNL-ASGN 80
           Q + T+ QW S+ G+ I+ NL ASGN
Sbjct: 202 QMYQTKKQWFSKTGSIIVVNLAASGN 227


>U67949-2|AAB07560.2|  368|Caenorhabditis elegans Hypothetical
           protein F55A4.2 protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 55  LFSTSPPATNSDRRSFFDEKSESAVNRCTITSYDTV 162
           L +T PP  N     FF + S++  +RCT+ S D +
Sbjct: 141 LSNTIPPCKNF---GFFAQHSDNVTDRCTVWSDDVI 173


>AF039046-1|AAB94210.1|  458|Caenorhabditis elegans F-box a protein
           protein 195 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 240 HIGKFFTLFPIHFNTRTDIITDNSTVHCIIARNST-SVHSTFTFF 109
           ++ KF  +FP  F T  + + ++ TVH  +    T  V   F FF
Sbjct: 7   YVAKFQNVFPESFRTFQNFLGNSKTVHMFLENFRTFPVGQIFQFF 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,050
Number of Sequences: 27780
Number of extensions: 215491
Number of successful extensions: 542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)