Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F15
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    28   1.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.3  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    26   4.4  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   5.8  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   5.8  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   7.6  

>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
 Frame = -2

Query: 404 SINSLKNPGLSGLF*AMTVCKQPFRRECIRSTSSILRRPGRSGVMSTMEQKRPIS----- 240
           S NS  +   SG+F  M +  Q      +R+ S+   R   +  ++  E++   +     
Sbjct: 310 SQNSGLSSSSSGIFGRMPIPAQSLDTTMLRTDSNSNIRRATTSFIANSEKENSSNFIDPQ 369

Query: 239 --ASVKFIEFMRSANLKVESTRNLAFAPLWIESFFISCPLRQIILLR 105
             AS+KF      +      T  + F PLWI + F+  P  +I  +R
Sbjct: 370 KYASIKFKNGNGVSKFMFLFTFGIVFPPLWILASFLPIPRTKIHQMR 416


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 593 LDSLLDTDPI--GLRADSSAPESPQGDTASSS 504
           L S L + P   GL  D S P SP+GD+ S S
Sbjct: 144 LSSSLTSSPSNSGLSLDKSLPSSPKGDSPSLS 175


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +1

Query: 322 HSRLKGCLQTVIAQNRPDRPGFLRELMETLPDLRTLSTLHTEKLVVFRTEHKELLRQQMW 501
           HS+L+GCL T+     P       E+ +T  D + LS + T+  V       E+L     
Sbjct: 194 HSKLQGCLYTIFNLKIP------LEMFDTSLDSKFLSNVKTK--VFNMKASTEILESLFT 245

Query: 502 SEEEAVS 522
           S EE++S
Sbjct: 246 SIEESLS 252


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 627 QQGSTTIACVFTGFAARYRSNRATSGF-VCT*ITPRRH 517
           Q G TT+A    GFA      R+ +G+ + T   PR H
Sbjct: 11  QNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVH 48


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
 Frame = +1

Query: 337 GCLQTVIAQNRPDRPGF----LRELMETLPDL-RTLST-LHTEKLVVFRTEHKELLRQQM 498
           GC +T     RPD PG     +R L++ +  L RT++  +    L ++  + ++LL Q  
Sbjct: 137 GCGKTHTISGRPDDPGIIFLTMRALLDRVEGLKRTMNVDISVSYLEIYNEKIRDLLVQDP 196

Query: 499 WSEEEAVS 522
            S E+  S
Sbjct: 197 LSMEKPKS 204


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = -2

Query: 563 GLRADSSAPESPQGDTASSSLHICCRNNSLCSVRKTTSFSVCSVLRVRKSGKVSINSLKN 384
           GL++ +   E+P+ +  S+       +N + + + T   +  SV     S     N+L++
Sbjct: 700 GLKSVNLTEEAPKPEVDSTPRFPSFTSNGITTDKPTLPDTTSSVPTQHNSFDAMHNTLRS 759

Query: 383 PGL---SGLF*AMTVCKQPFRRECIRSTSS 303
           P L   +    A TV + PF    I   SS
Sbjct: 760 PSLNSNNSSAHASTVSRNPFHNLKISGASS 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,761
Number of Sequences: 5004
Number of extensions: 58162
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)