Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F15
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50857-5|CAJ43436.1|  719|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z50857-4|CAC42283.1|  694|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z50857-3|CAC42284.1|  753|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z50857-1|CAC42285.1|  267|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AF136240-1|AAD34464.1|  267|Caenorhabditis elegans DAF-12 B prot...    33   0.19 
AF136239-1|AAD34463.1|  694|Caenorhabditis elegans DAF-12 A2 pro...    33   0.19 
AF136238-1|AAD34462.1|  753|Caenorhabditis elegans DAF-12 A1 pro...    33   0.19 
AF016450-7|AAB65986.1|  323|Caenorhabditis elegans Serpentine re...    29   4.0  
Z83223-1|CAB05718.1|  393|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.      28   7.0  
Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...    27   9.3  
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...    27   9.3  

>Z50857-5|CAJ43436.1|  719|Caenorhabditis elegans Hypothetical
           protein F11A1.3d protein.
          Length = 719

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 25  QEDKFTLLKSGLFDALFVRLICMFDAPLNS 114
           QE KF+LLK G+ + L VR +  +DA  NS
Sbjct: 546 QEGKFSLLKGGMIEMLTVRGVTRYDASTNS 575


>Z50857-4|CAC42283.1|  694|Caenorhabditis elegans Hypothetical
           protein F11A1.3b protein.
          Length = 694

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 25  QEDKFTLLKSGLFDALFVRLICMFDAPLNS 114
           QE KF+LLK G+ + L VR +  +DA  NS
Sbjct: 521 QEGKFSLLKGGMIEMLTVRGVTRYDASTNS 550


>Z50857-3|CAC42284.1|  753|Caenorhabditis elegans Hypothetical
           protein F11A1.3a protein.
          Length = 753

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 25  QEDKFTLLKSGLFDALFVRLICMFDAPLNS 114
           QE KF+LLK G+ + L VR +  +DA  NS
Sbjct: 580 QEGKFSLLKGGMIEMLTVRGVTRYDASTNS 609


>Z50857-1|CAC42285.1|  267|Caenorhabditis elegans Hypothetical
           protein F11A1.3c protein.
          Length = 267

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 25  QEDKFTLLKSGLFDALFVRLICMFDAPLNS 114
           QE KF+LLK G+ + L VR +  +DA  NS
Sbjct: 94  QEGKFSLLKGGMIEMLTVRGVTRYDASTNS 123


>AF136240-1|AAD34464.1|  267|Caenorhabditis elegans DAF-12 B
           protein.
          Length = 267

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 25  QEDKFTLLKSGLFDALFVRLICMFDAPLNS 114
           QE KF+LLK G+ + L VR +  +DA  NS
Sbjct: 94  QEGKFSLLKGGMIEMLTVRGVTRYDASTNS 123


>AF136239-1|AAD34463.1|  694|Caenorhabditis elegans DAF-12 A2
           protein.
          Length = 694

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 25  QEDKFTLLKSGLFDALFVRLICMFDAPLNS 114
           QE KF+LLK G+ + L VR +  +DA  NS
Sbjct: 521 QEGKFSLLKGGMIEMLTVRGVTRYDASTNS 550


>AF136238-1|AAD34462.1|  753|Caenorhabditis elegans DAF-12 A1
           protein.
          Length = 753

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 25  QEDKFTLLKSGLFDALFVRLICMFDAPLNS 114
           QE KF+LLK G+ + L VR +  +DA  NS
Sbjct: 580 QEGKFSLLKGGMIEMLTVRGVTRYDASTNS 609


>AF016450-7|AAB65986.1|  323|Caenorhabditis elegans Serpentine
           receptor, class t protein70 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 350 VCKQPFRRECIRSTSSILR--RPGRSGVMSTMEQKRPISAS 234
           VC +  R EC+R      R  RP RS ++S +    PI+ S
Sbjct: 273 VCNKSIRDECLRFLKIKKRPSRPSRSDILSKLSSIHPINPS 313


>Z83223-1|CAB05718.1|  393|Caenorhabditis elegans Hypothetical
           protein E01G4.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
 Frame = +1

Query: 292 LRNIELVERMHSRLKGCLQTVIAQNRPDRPGFLREL--METLPDLRTLST-------LHT 444
           LR  E   R+HS   G  + V     P RP   REL   + L +   LS        LH 
Sbjct: 253 LRLAEEQMRVHSDAAGEFEVVTQLELPPRPEIYRELPVSKDLWNSFKLSNGSYDPMKLHH 312

Query: 445 EKLVVFRTEHKELLRQQMWSEEEAVSPWGDSGADESAR 558
            K+ VFR      LR++ W        W +S  D   R
Sbjct: 313 LKMNVFRGGLNAELRKEAWKCLLGYRQWHESDTDFQTR 350


>Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical
           protein F13B12.1 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -2

Query: 614 PQSPAFSLDSLLDTDPIGLRADSSAPESPQGD 519
           P SPA S  S     PI  R++ +APESP GD
Sbjct: 13  PTSPASSGASS-PLAPISPRSEGNAPESPSGD 43


>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical protein
            F26A3.8 protein.
          Length = 1601

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -2

Query: 341  QPFRRECIRSTSSILRRPGRSGVMSTMEQKRPISASVKFIEFMRSANLKVESTRNLAFAP 162
            +PF +   +      +R    G +  + +K+     VKF +FM     +  ST  L+F P
Sbjct: 1391 EPFFKIIEKEEYEKQKRDSSRGNIDPLTEKKRSDMMVKFFQFMGCRKFRKMST--LSFCP 1448

Query: 161  LWIESFFI 138
            L   S F+
Sbjct: 1449 LNFSSIFM 1456


>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
          Length = 1601

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -2

Query: 341  QPFRRECIRSTSSILRRPGRSGVMSTMEQKRPISASVKFIEFMRSANLKVESTRNLAFAP 162
            +PF +   +      +R    G +  + +K+     VKF +FM     +  ST  L+F P
Sbjct: 1391 EPFFKIIEKEEYEKQKRDSSRGNIDPLTEKKRSDMMVKFFQFMGCRKFRKMST--LSFCP 1448

Query: 161  LWIESFFI 138
            L   S F+
Sbjct: 1449 LNFSSIFM 1456


>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 127 NGQLM--KKDSIQSGANARFLVDSTFKFAERMNSMNLTDAEIGLFCSIVLITPDRPGLRN 300
           +GQL   K+  ++  ANA F       F   ++S+   D + G F  IVLI  +  G +N
Sbjct: 85  DGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVYFWDLDNGGFAGIVLIKKEGDGAKN 144

Query: 301 I 303
           I
Sbjct: 145 I 145


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 127 NGQLM--KKDSIQSGANARFLVDSTFKFAERMNSMNLTDAEIGLFCSIVLITPDRPGLRN 300
           +GQL   K+  ++  ANA F       F   ++S+   D + G F  IVLI  +  G +N
Sbjct: 85  DGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVYFWDLDNGGFAGIVLIKKEGDGAKN 144

Query: 301 I 303
           I
Sbjct: 145 I 145


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 127 NGQLM--KKDSIQSGANARFLVDSTFKFAERMNSMNLTDAEIGLFCSIVLITPDRPGLRN 300
           +GQL   K+  ++  ANA F       F   ++S+   D + G F  IVLI  +  G +N
Sbjct: 85  DGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVYFWDLDNGGFAGIVLIKKEGDGAKN 144

Query: 301 I 303
           I
Sbjct: 145 I 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,824,061
Number of Sequences: 27780
Number of extensions: 341481
Number of successful extensions: 910
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)