Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F15
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...   217   8e-59
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    60   1e-11
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    50   2e-08
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    50   2e-08
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score =  217 bits (530), Expect = 8e-59
 Identities = 98/168 (58%), Positives = 135/168 (80%), Gaps = 1/168 (0%)
 Frame = +1

Query: 13  SARGQEDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKKDSIQSGANARFLVDS 192
           S   Q+D+ TLLK+G+F+ L VRL CMFDA  NS+ICLNGQ++K++SI + +NARFL+DS
Sbjct: 260 SLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARFLMDS 319

Query: 193 TFKFAERMNSMNLTDAEIGLFCSIVLITPDRPGLRNIELVERMHSRLKGCLQTVIAQNRP 372
            F FAER+NS+ L+DAE+GLFCS+V+I  DRPGLRN ELVERMH++L+  LQTV+AQN P
Sbjct: 320 MFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQNHP 379

Query: 373 DRPGFLRELMETLPDLRTLSTLHTEKLVVFR-TEHKELLRQQMWSEEE 513
             P  LREL++ +PDLRTL+TLH+EKL+ F+ TE ++ ++ Q   +++
Sbjct: 380 QHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQ 427


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 60.5 bits (140), Expect = 1e-11
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
 Frame = +1

Query: 25  QEDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKKDSIQSGANARFLVDSTFKF 204
           +ED+  LLK+   + + +R+   +D   +SII  N Q   KDS  + A     ++    F
Sbjct: 404 REDQIALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTKDS-YTVAGMGETIEDLLHF 462

Query: 205 AERMNSMNLTDAEIGLFCSIVLITPDRPGLRNIELVERMHSRLKGCLQTVIAQNRPDRPG 384
             +M +M + +AE  L  +IV+ + +RP L     VE++       L+  +   R   PG
Sbjct: 463 CRQMYAMKVNNAEYALLTAIVIFS-ERPNLLEGWKVEKIQEIYLEALRAYVDNRRRPNPG 521

Query: 385 -FLRELMETLPDLRTLSTLHTEKLVVFRTEHKEL 483
                L+  L +LRTL   ++E     + ++K+L
Sbjct: 522 TVFARLLSVLTELRTLGNQNSEMCFSLKFKNKKL 555


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 50.4 bits (115), Expect = 2e-08
 Identities = 34/146 (23%), Positives = 62/146 (42%)
 Frame = +1

Query: 28  EDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKKDSIQSGANARFLVDSTFKFA 207
           ED+  LL++G  + L            + I+   G  + ++S Q             +  
Sbjct: 261 EDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATGITVHRNSAQQAGVGTIFDRVLSELV 320

Query: 208 ERMNSMNLTDAEIGLFCSIVLITPDRPGLRNIELVERMHSRLKGCLQTVIAQNRPDRPGF 387
            +M  M +   E+G   SI+L  P+  GL++I+ V  +  ++ G L+       PD  G 
Sbjct: 321 SKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREKIYGALEGYCRVAWPDDAGR 380

Query: 388 LRELMETLPDLRTLSTLHTEKLVVFR 465
             +L+  LP +R++     E L  F+
Sbjct: 381 FAKLLLRLPAIRSIGLKCLEYLFFFK 406


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 50.4 bits (115), Expect = 2e-08
 Identities = 34/146 (23%), Positives = 62/146 (42%)
 Frame = +1

Query: 28  EDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKKDSIQSGANARFLVDSTFKFA 207
           ED+  LL++G  + L            + I+   G  + ++S Q             +  
Sbjct: 261 EDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATGITVHRNSAQQAGVGTIFDRVLSELV 320

Query: 208 ERMNSMNLTDAEIGLFCSIVLITPDRPGLRNIELVERMHSRLKGCLQTVIAQNRPDRPGF 387
            +M  M +   E+G   SI+L  P+  GL++I+ V  +  ++ G L+       PD  G 
Sbjct: 321 SKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREKIYGALEGYCRVAWPDDAGR 380

Query: 388 LRELMETLPDLRTLSTLHTEKLVVFR 465
             +L+  LP +R++     E L  F+
Sbjct: 381 FAKLLLRLPAIRSIGLKCLEYLFFFK 406


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 551 DSSAPESPQGDTASSS 504
           D   P SPQ D++SSS
Sbjct: 438 DDQPPLSPQSDSSSSS 453


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 541 HLNHPKETPLPLRSTFAVAIILCA 470
           H  HP ETP P   T       CA
Sbjct: 465 HHPHPPETPGPQVETILQNACFCA 488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,681
Number of Sequences: 438
Number of extensions: 3886
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)