Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F14
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 189 3e-49
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 56 3e-09
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 55 7e-09
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 29 0.73
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 2.2
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 3.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 3.9
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 3.9
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 25 6.8
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 6.8
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 6.8
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 9.0
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 9.0
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 189 bits (460), Expect = 3e-49
Identities = 92/189 (48%), Positives = 122/189 (64%), Gaps = 1/189 (0%)
Frame = -1
Query: 631 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXKD-EPPPKR 455
LKVPP I QF +TLDK TA +FK+L KYRPET K + K+
Sbjct: 69 LKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKK 128
Query: 454 PNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGA 275
P ++ G N V L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG
Sbjct: 129 PYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGT 188
Query: 274 LVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAK 95
++H+KT +A+T V D+ + +V A+ NF+ +Y+E RR WGGG++G K+ A +AK
Sbjct: 189 VIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQALLAK 248
Query: 94 LEKAKAREI 68
KA A +
Sbjct: 249 RAKAAAATV 257
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 56.4 bits (130), Expect = 3e-09
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = -1
Query: 445 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALV 269
LR G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG A
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACG 91
Query: 268 HRKTCTSVALTNVESGD 218
+ S ++T E+ D
Sbjct: 92 VSRPVISASITTNEASD 108
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 55.2 bits (127), Expect = 7e-09
Identities = 35/103 (33%), Positives = 51/103 (49%)
Frame = -1
Query: 460 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 281
K+ + LR G V K V K + LV++A D+ P++++ +P LC VPY K L
Sbjct: 50 KQKHILR-GVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELL 108
Query: 280 GALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEEL 152
G + K TS + V G + SKV E + E YEE+
Sbjct: 109 GEASNTKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEI 145
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 28.7 bits (61), Expect = 0.73
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +3
Query: 69 ISRAFAFSSLAIRAFD-LLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRA 245
+S+ A SS A D L RT PP L + SL + F + A SPD +
Sbjct: 258 VSKHEALSSTANIVKDGSLERTEPPNSLNSKISYSLYCNETLVSFFRRPAFSPDGLLL-V 316
Query: 246 TLVQVLRCTSAPNRDLPFT 302
T LR PN ++P+T
Sbjct: 317 TPAGRLRPHGQPNFEVPYT 335
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +3
Query: 189 ASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTIQYGTPILRQSAGRKSTSSIGS 368
++T++ + ST ++L+ V ++ T +Q + KS+ +G
Sbjct: 587 SNTSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSEFVGQ 646
Query: 369 TS*AMTTSCAFFFSTSLVT 425
T+ TTS + F+T+L T
Sbjct: 647 TTTEYTTSGSVGFTTTLAT 665
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 179 QLQ*ALRRVTQTLGRWRPR*QVERAYRQAGE 87
Q++ L R+ Q +G + R ++ERA RQA E
Sbjct: 249 QIRFNLERICQDIGNFDVRSRIERAARQARE 279
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 3.9
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -1
Query: 205 SKVVEAIKTNFNERYEELRRHWGGGVLGNKS---NARIAKLEKAKAREIAQKQG*ALNKV 35
+K+ EA K FNE E+L GGG L K+ A + + A+A + KQ +NKV
Sbjct: 23 AKINEA-KKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQT-LINKV 80
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 135 PPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFT 302
P Q + +SS S V + S++ + S DST + +T + T P P T
Sbjct: 264 PTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPIT 319
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +3
Query: 39 LFSAQPCFCAI-SRAFAFSSLAI---RAFDLLPRTPPPQCLR 152
+F+ QP FC+ AF + + F +LP P P CL+
Sbjct: 99 IFNLQPRFCSFYDPAFLKDDVEFLENKGFCVLPDPPTPSCLK 140
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 282 NRDLPFTIQYGTPILRQSAGRKSTSSIGS 368
+ +LPF P++R S GRK + S+G+
Sbjct: 535 SNELPFKEIILHPLVRDSEGRKMSKSLGN 563
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 621 RRQSTSSPRH*IKPQPKVCSRSWRNTG 541
R Q+TSSP + ++PQ KV + + G
Sbjct: 188 RMQNTSSPTNSLRPQLKVQTNGYETPG 214
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = -1
Query: 580 TAKGLFKILEKYR 542
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 300 TIQYGTPILRQSAGRKS-TSSIGSTS*AMTTSCAFFFSTSLVTVLVPA 440
T+ I+ +AG + T+S+GS+S A T + A ST V +VP+
Sbjct: 780 TVSGTVMIVEPTAGYVTVTTSLGSSSYATTVATASGTSTGTVLQVVPS 827
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,665
Number of Sequences: 5004
Number of extensions: 41971
Number of successful extensions: 123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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