Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F14
         (631 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...   263   4e-72
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   2.6  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   2.6  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score =  263 bits (644), Expect = 4e-72
 Identities = 122/191 (63%), Positives = 148/191 (77%)
 Frame = -1

Query: 631 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXKDEPPPKRP 452
           LK+PPPINQFTQTLDK TA+ + K  +KYRPE                   K+EPP KR 
Sbjct: 80  LKIPPPINQFTQTLDKPTAQQVMKCWKKYRPENPIARVQRLKAKAEAKAAGKEEPPSKRA 139

Query: 451 NTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 272
           N LR G N+V K+VE+KKAQLV+IAHDVDPIELV++LPALCRKMGVPYCI+KGK+RLG L
Sbjct: 140 NQLRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKARLGTL 199

Query: 271 VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 92
           V+RKTCT VALT  E+ D+   +K+VE IKTNFN+R++++RRHWGGG+LG KS AR+AKL
Sbjct: 200 VYRKTCTCVALTQFENADKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLGPKSMARLAKL 259

Query: 91  EKAKAREIAQK 59
           EKAK RE+ QK
Sbjct: 260 EKAKKREMLQK 270


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 208  FSKVVEAIKTNFNERYEELRRHWG 137
            FS+ +     NF+  + EL+R WG
Sbjct: 1856 FSRTIPFFGGNFSPEHTELQRTWG 1879


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 208  FSKVVEAIKTNFNERYEELRRHWG 137
            FS+ +     NF+  + EL+R WG
Sbjct: 1857 FSRTIPFFGGNFSPEHTELQRTWG 1880


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,742
Number of Sequences: 2352
Number of extensions: 10767
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)