Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F14
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 214 4e-56
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 198 2e-51
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 55 5e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 49 2e-06
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 47 1e-05
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 31 0.51
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 214 bits (523), Expect = 4e-56
Identities = 98/190 (51%), Positives = 135/190 (71%)
Frame = -1
Query: 631 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXKDEPPPKRP 452
LKVPP INQF LD +A+ FK+L+KYRPE+ K E KRP
Sbjct: 75 LKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRP 134
Query: 451 NTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 272
NT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +
Sbjct: 135 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 194
Query: 271 VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 92
V RKT +VAL +V D++A +K+VE + NF+ER+EE+R+HWGGGV+ KS+A+ K+
Sbjct: 195 VRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKI 254
Query: 91 EKAKAREIAQ 62
E+A+AR++ +
Sbjct: 255 ERARARDLGK 264
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 198 bits (484), Expect = 2e-51
Identities = 96/190 (50%), Positives = 133/190 (70%)
Frame = -1
Query: 631 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXKDEPPPKRP 452
LKVPP INQF LD +A+ FK+L+KYRPE+ KRP
Sbjct: 75 LKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVT--------------------KRP 114
Query: 451 NTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 272
NT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +
Sbjct: 115 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 174
Query: 271 VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 92
V RKT +VAL +V D++A +K+VE + NF+ER+EE+R+HWGGGV+ KS+A+ K+
Sbjct: 175 VRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKI 234
Query: 91 EKAKAREIAQ 62
E+A+AR++ +
Sbjct: 235 ERARARDLGK 244
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Frame = -1
Query: 445 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 272
L+ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 271 VHRKTCTSVALTNVESGDRAAFSKVVEAIK 182
V R + N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Frame = -1
Query: 448 TLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-AL 272
TLR G V K + + + + ++A +V PI++ +P +C + +PY + + +LG A+
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 271 VHRKTCTSVALTNVESGD-RAAFSKVVEAIK 182
HR+ S+ + SGD + + +V EA++
Sbjct: 128 GHRR--PSILIFVKPSGDFKELYDEVAEALR 156
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = -1
Query: 631 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 533
LKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 178 LKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 31.5 bits (68), Expect = 0.51
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 183 LIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTIQYGTPI 323
L+ T E A +S D F V V TS+PN+D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 262 YGVQAHPIVIYPSRYSTGLPS 324
YGV+A P+V YP+ STGL S
Sbjct: 155 YGVKA-PVVSYPTSVSTGLSS 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,083,438
Number of Sequences: 27780
Number of extensions: 250419
Number of successful extensions: 573
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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