Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F12
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    27   1.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   6.5  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   8.6  

>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 221 IDISLYN*RLGIFPHQTISYRQLT 150
           +D +L N  LG FP +T SYR++T
Sbjct: 210 LDENLINRLLGYFPKKTPSYREIT 233


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 480 PSPTCAVSRTGLRHDNFQSTMTSTSPN*YNRKPFT*LKP 364
           P P+ + + TG  + + +S+   T+P+ +   P T L+P
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEP 311


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 480 PSPTCAVSRTGLRHDNFQSTMTSTSPN*YNRKPFT 376
           PS   + + +  RH    S  + +SPN +N  PFT
Sbjct: 151 PSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFT 185


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 198 LVI*TNINIFNVYHTQQYFRISKLSFSFSYHRQILSYAILLTHNNNYYLS 347
           +++ TN N   +Y+T  +  + KLS +   + ++LS    L+ +N+Y +S
Sbjct: 408 VLVSTNDNAIRLYNTVTHALVLKLSDAHRVNGRVLS---RLSEDNSYIIS 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,489
Number of Sequences: 5004
Number of extensions: 28436
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)