Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F11
(147 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 28 0.19
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 1.4
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 2.4
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 24 2.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 24 2.4
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 23 5.5
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 23 5.5
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 23 5.5
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 23 5.5
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 22 9.6
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 22 9.6
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 27.9 bits (59), Expect = 0.19
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 26 EAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKA 130
+AAQ+ +++ LQ L DQ+ Y +N E + A
Sbjct: 133 QAAQKCRIKKKKYLQTLQDQVNYYTSENKELLQSA 167
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 44 NNEQRDQLQALNDQLRTYQDKNNEAVAKARRDT 142
NNE ++ + L ++L+TY DK V + T
Sbjct: 413 NNELLNENRVLKEKLQTYLDKKESNVTSKIKST 445
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 24.2 bits (50), Expect = 2.4
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -3
Query: 133 SSFRYGFIIFILIG 92
SS +YGF++ I++G
Sbjct: 236 SSIKYGFVVIIIVG 249
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 59 DQLQALNDQLRTYQDKNNEAVAKARRD 139
D +Q++ D R K NEA+ +RD
Sbjct: 822 DSMQSVLDNYRESISKQNEAIEMGKRD 848
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 11 LRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKARRD 139
L E EAA +NNE + +L +Q+K ++V + + +
Sbjct: 558 LAAEKEAAVATNNELSESKNSLQTLCNAFQEKLAKSVMQLKEN 600
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 18 LNWKQRSAATTSSAINCKR*TINCAPIRIKIMK 116
L++ AAT++ R TINC P ++K
Sbjct: 190 LSYSATGAATSNCPPKYVRSTINCVPTTNSLLK 222
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 23.0 bits (47), Expect = 5.5
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 21 NWKQRSAATTSSAINCKR*TIN-CAPIRIKIMKP 119
NW A T SS I C R IN P+ +KP
Sbjct: 1015 NWNAPIAITYSSVIYCLRSIINQDIPLNEGCLKP 1048
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 59 DQLQALNDQLRTYQDKNNE 115
D + ++ND+ +TYQ N E
Sbjct: 40 DSVNSVNDEFQTYQLPNGE 58
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 53 QRDQLQALNDQLRTYQDKNN 112
QRD L L DQ++ Y D+ N
Sbjct: 148 QRDHLDRLCDQVKFYLDQCN 167
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 143 LCLFELSLRLHYFYPD 96
+C F+ R HYFYPD
Sbjct: 76 VCKFD---RKHYFYPD 88
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -2
Query: 146 VLCL-FELSLRLHYFYP 99
+ C+ F LS L+YFYP
Sbjct: 170 ITCMKFGLSTTLYYFYP 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,606
Number of Sequences: 5004
Number of extensions: 3220
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 29
effective length of database: 2,217,362
effective search space used: 42129878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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