Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F11
(147 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate fi... 29 0.59
U41538-6|AAG00007.2| 575|Caenorhabditis elegans Intermediate fi... 29 0.59
AF039716-9|AAB96734.2| 548|Caenorhabditis elegans Hypothetical ... 29 0.59
M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical pr... 28 0.78
M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical pr... 28 0.78
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 1.4
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 1.4
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 1.4
AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical ... 27 1.8
AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical ... 27 1.8
U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like p... 26 4.2
AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like ... 26 4.2
AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like ... 26 4.2
AY835433-1|AAX37360.1| 331|Caenorhabditis elegans bZIP transcri... 25 5.5
AY835432-1|AAX37359.1| 467|Caenorhabditis elegans bZIP transcri... 25 5.5
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 25 5.5
AF016440-2|AAB65905.2| 331|Caenorhabditis elegans Abnormal ever... 25 5.5
AF016440-1|ABA54419.1| 467|Caenorhabditis elegans Abnormal ever... 25 5.5
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 25 7.3
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 25 7.3
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 25 7.3
U49946-5|AAX55699.1| 919|Caenorhabditis elegans Diacylglycerol ... 25 7.3
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 25 7.3
AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical ... 25 7.3
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 25 9.7
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 25 9.7
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 25 9.7
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 25 9.7
>U41538-7|AAP31430.1| 465|Caenorhabditis elegans Intermediate
filament, d protein1, isoform b protein.
Length = 465
Score = 28.7 bits (61), Expect = 0.59
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 MALRT-ELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKARRDT 142
+ALR E RS +D L+ LN + T++ E + KARRD+
Sbjct: 202 LALRDKERNGFSRSQTAAQDLLKKLNATISTHEIAIREEINKARRDS 248
>U41538-6|AAG00007.2| 575|Caenorhabditis elegans Intermediate
filament, d protein1, isoform a protein.
Length = 575
Score = 28.7 bits (61), Expect = 0.59
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 MALRT-ELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKARRDT 142
+ALR E RS +D L+ LN + T++ E + KARRD+
Sbjct: 202 LALRDKERNGFSRSQTAAQDLLKKLNATISTHEIAIREEINKARRDS 248
>AF039716-9|AAB96734.2| 548|Caenorhabditis elegans Hypothetical
protein W03G9.7 protein.
Length = 548
Score = 28.7 bits (61), Expect = 0.59
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 35 QRSNNEQRD-QLQALNDQLRTYQDKNNEAVAKARRDTI 145
+R NN QR+ Q AL ++L+ Q KN K RRD+I
Sbjct: 493 ERRNNLQREKQAMALQEKLKLRQQKNRRN-RKERRDSI 529
>M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical
protein ZK370.3b protein.
Length = 921
Score = 28.3 bits (60), Expect = 0.78
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +2
Query: 11 LRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKARRD 139
++ +LEA+++S ++ +++ ALN ++ Q + A+ KA D
Sbjct: 444 IQKQLEASEKSKFDKDEEITALNRKVEEAQREAGRALTKAEGD 486
>M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical
protein ZK370.3a protein.
Length = 927
Score = 28.3 bits (60), Expect = 0.78
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +2
Query: 11 LRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKARRD 139
++ +LEA+++S ++ +++ ALN ++ Q + A+ KA D
Sbjct: 444 IQKQLEASEKSKFDKDEEITALNRKVEEAQREAGRALTKAEGD 486
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 11 LRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKAR 133
+R+E +A + +N + QLQA ND++ N+ +K R
Sbjct: 1242 VRSEAKALETTNTALKAQLQAANDRIDHLTKTVNDHTSKVR 1282
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 11 LRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKAR 133
+R+E +A + +N + QLQA ND++ N+ +K R
Sbjct: 1315 VRSEAKALETTNTALKAQLQAANDRIDHLTKTVNDHTSKVR 1355
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 11 LRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKAR 133
+R+E +A + +N + QLQA ND++ N+ +K R
Sbjct: 1315 VRSEAKALETTNTALKAQLQAANDRIDHLTKTVNDHTSKVR 1355
>AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical
protein H20J18.1b protein.
Length = 909
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 35 QRSNNEQRDQLQALNDQLRTYQDKNNEAVAKAR 133
Q SNN + QLQ L +Q R Q + ++V A+
Sbjct: 463 QASNNALQQQLQQLVEQQRQQQQQQQQSVQNAQ 495
>AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical
protein H20J18.1a protein.
Length = 947
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 35 QRSNNEQRDQLQALNDQLRTYQDKNNEAVAKAR 133
Q SNN + QLQ L +Q R Q + ++V A+
Sbjct: 463 QASNNALQQQLQQLVEQQRQQQQQQQQSVQNAQ 495
>U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like
protein protein 18 protein.
Length = 932
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2
Query: 5 MALRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKA 130
MAL E+E ++ + + + Q + L+ +L + +DK+ EA +K+
Sbjct: 511 MALFAEVETSEDAVLDLQCQNEKLSCELSSLKDKHEEATSKS 552
>AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like
protein-18 protein.
Length = 932
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2
Query: 5 MALRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKA 130
MAL E+E ++ + + + Q + L+ +L + +DK+ EA +K+
Sbjct: 511 MALFAEVETSEDAVLDLQCQNEKLSCELSSLKDKHEEATSKS 552
>AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like
protein KLP-18 protein.
Length = 930
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2
Query: 5 MALRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKA 130
MAL E+E ++ + + + Q + L+ +L + +DK+ EA +K+
Sbjct: 509 MALFAEVETSEDAVLDLQCQNEKLSCELSSLKDKHEEATSKS 550
>AY835433-1|AAX37360.1| 331|Caenorhabditis elegans bZIP
transcription factor FOS-1b protein.
Length = 331
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 26 EAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAK 127
EAA R + D ++ L DQ+ +++ N++ +A+
Sbjct: 39 EAAARCRQRRIDLMKELQDQVNDFKNSNDKKMAE 72
>AY835432-1|AAX37359.1| 467|Caenorhabditis elegans bZIP
transcription factor FOS-1a protein.
Length = 467
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 26 EAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAK 127
EAA R + D ++ L DQ+ +++ N++ +A+
Sbjct: 175 EAAARCRQRRIDLMKELQDQVNDFKNSNDKKMAE 208
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 35 QRSNNEQRDQLQALNDQLRTYQDK 106
+R NEQ ++ +ND LR Y+ K
Sbjct: 915 ERKYNEQHKKVMKMNDVLREYERK 938
>AF016440-2|AAB65905.2| 331|Caenorhabditis elegans Abnormal
eversion of vulva protein5, isoform a protein.
Length = 331
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 26 EAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAK 127
EAA R + D ++ L DQ+ +++ N++ +A+
Sbjct: 39 EAAARCRQRRIDLMKELQDQVNDFKNSNDKKMAE 72
>AF016440-1|ABA54419.1| 467|Caenorhabditis elegans Abnormal
eversion of vulva protein5, isoform b protein.
Length = 467
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 26 EAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAK 127
EAA R + D ++ L DQ+ +++ N++ +A+
Sbjct: 175 EAAARCRQRRIDLMKELQDQVNDFKNSNDKKMAE 208
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 8 ALRTELEAAQRSNNEQRDQLQALNDQLRTYQD---KNNEAVAKARRD 139
AL+ +++ + S + + Q+ + Q+R+ QD + +EA+AK ++
Sbjct: 958 ALKKQIQDLEMSLRKAESEKQSKDHQIRSLQDEMQQQDEAIAKLNKE 1004
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 8 ALRTELEAAQRSNNEQRDQLQALNDQLRTYQD---KNNEAVAKARRD 139
AL+ +++ + S + + Q+ + Q+R+ QD + +EA+AK ++
Sbjct: 958 ALKKQIQDLEMSLRKAESEKQSKDHQIRSLQDEMQQQDEAIAKLNKE 1004
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 2 TMALRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAK 127
T L +LEA++ S E +++ A+N+Q + K +A K
Sbjct: 900 TADLLAQLEASKGSTREVEERMTAMNEQKVALEGKLADASKK 941
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 2 TMALRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAK 127
T L +LEA++ S E +++ A+N+Q + K +A K
Sbjct: 900 TADLLAQLEASKGSTREVEERMTAMNEQKVALEGKLADASKK 941
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 2 TMALRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAK 127
T L +LEA++ S E +++ A+N+Q + K +A K
Sbjct: 900 TADLLAQLEASKGSTREVEERMTAMNEQKVALEGKLADASKK 941
>U49946-5|AAX55699.1| 919|Caenorhabditis elegans Diacylglycerol
kinase protein 1,isoform e protein.
Length = 919
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 14 RTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAK 127
RTEL Q N DQ Q+ Q+ Y N VAK
Sbjct: 219 RTELPMEQLLNISSHDQPQSRKGQIFHYPISRNIVVAK 256
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 8 ALRTELEAAQRSNNEQRDQLQALNDQLRTYQD---KNNEAVAKARRD 139
AL+ +++ + S + + Q+ + Q+R+ QD + +EA+AK ++
Sbjct: 961 ALKKQIQDLEMSLRKAESEKQSKDHQIRSLQDEMQQQDEAIAKLNKE 1007
>AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical
protein F41E6.9 protein.
Length = 217
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 8 ALRTELEAAQRSNNEQR-DQLQALNDQLRTYQDKNNE 115
A++ L+ Q+ + DQ++ L DQ+ D NNE
Sbjct: 107 AMKDGLKTMQKEYKKMNIDQIEDLQDQMEDMLDMNNE 143
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 20 ELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAV 121
+L++A + ++RD+L A ++ LRT + N +
Sbjct: 808 KLKSAVTATTQERDELTATSESLRTECENLNSKI 841
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 20 ELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAV 121
+L++A + ++RD+L A ++ LRT + N +
Sbjct: 810 KLKSAVTATTQERDELTATSESLRTECENLNSKI 843
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 20 ELEAAQRSNNEQRDQLQALNDQLRTYQDKNNE 115
++E A NE+ + + L+D+L+ ++NN+
Sbjct: 247 KMEKALERENERLNHQKELSDKLKVVNEENND 278
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 8 ALRTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAVAKARRDT 142
ALR + E ++ S++ Q + L+ LN + + E ++KARRDT
Sbjct: 205 ALRDK-ERSKHSSSSQ-ELLKRLNGCISQHDIAIREEISKARRDT 247
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 20 ELEAAQRSNNEQRDQLQALNDQLRTYQDKNNEAV 121
+L++A + ++RD+L A ++ LRT + N +
Sbjct: 810 KLKSAVTATTQERDELTATSESLRTECENLNSKI 843
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,744
Number of Sequences: 27780
Number of extensions: 19238
Number of successful extensions: 165
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 29
effective length of database: 11,934,578
effective search space used: 226756982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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