Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F11
         (147 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   0.44 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   3.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   5.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    19   7.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    18   9.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    18   9.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    18   9.4  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 0.44
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 44  NNEQRDQLQALNDQLRTYQDKNNEAVAKARRD 139
           NN Q D +Q  N+Q    Q KNN+  A  +++
Sbjct: 416 NNNQNDNIQNTNNQNDNNQ-KNNKKNANNQKN 446


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = +2

Query: 14  RTELEAAQRSNNEQRDQLQALNDQLRTYQDKNNE 115
           R E+E  +    EQR+    +  Q +  Q +  +
Sbjct: 66  RKEMEQMREREREQREHSDRVTSQQQQQQQQQQQ 99


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -2

Query: 113 HYFYPD 96
           H+FYPD
Sbjct: 351 HFFYPD 356


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 21  NWKQRSAATTSSAI 62
           NW Q  A    SAI
Sbjct: 114 NWAQNKAGACGSAI 127


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 23  LEAAQRSNNEQ 55
           LEAA+RSN  Q
Sbjct: 213 LEAARRSNLSQ 223


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +2

Query: 23  LEAAQRSNNEQRDQLQALNDQLRTYQDKNN 112
           + A  R+ NE  ++  +      TY  K+N
Sbjct: 362 MNAVIRNFNESENRRNSCLGSTETYYSKHN 391


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 23  LEAAQRSNNEQ 55
           LEAA+RSN  Q
Sbjct: 303 LEAARRSNLSQ 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,667
Number of Sequences: 438
Number of extensions: 305
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 29
effective length of database: 133,641
effective search space used:  2539179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)