Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F10
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   1.8  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    26   1.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   4.1  
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.4  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   5.4  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    24   7.1  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    24   7.1  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -1

Query: 261 YVSTNNVQRACKIMSINKRIFNTICKSNNKRNTKQSLYSL 142
           YV T +V ++  + +I KRIFN++  S N  N ++ L S+
Sbjct: 615 YVGTTSVGKSSVLDNILKRIFNSL-TSINDSNIEKLLESI 653


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 112 LVLSHLFTVDQ*IQRLFSVTFVIRFTYCVEYTFIDRHYLACTLHIICTYILYFVYAQK 285
           L LSH+F       R     +V+   +C  Y  +  HY    +  +C  I+ FV+AQK
Sbjct: 264 LFLSHVFPR----YRFCFYGYVLWLCWCTMY--LTHHYFVDLVGGMCLAIICFVFAQK 315


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 94   NNFYWFLVLSHLFTVDQ*IQRLFSVTFVIRFTYCVEYTFID 216
            NN++W   +   +  D   + +    F + F Y  EY+ +D
Sbjct: 1820 NNYFWSREVKAFYREDHDDEAVVIKMFSLEFIYAFEYSELD 1860


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 188 VNLITNVTLNSLCIHWSTVN 129
           ++L +N+    LCIHWS  N
Sbjct: 139 LDLASNLASLPLCIHWSVEN 158


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +1

Query: 85  HIHNNFYWFLVLSHL 129
           H+H +F+++ +L HL
Sbjct: 351 HLHQSFFFYFILDHL 365


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 160 FSVTFVIRFTYCVEYTFIDRHY 225
           F  T+V+  +Y  +YT I R+Y
Sbjct: 168 FGATYVLTKSYLAKYTHIYRYY 189


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 43  G*CIILFIYICYSFHIHNNFYW-FLVLSHLFTVD 141
           G C+++F Y   S++I +NF   FL +S+  ++D
Sbjct: 354 GSCVLIFTYF-MSYYIFSNFLTSFLQVSYGLSID 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,970
Number of Sequences: 5004
Number of extensions: 28764
Number of successful extensions: 57
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)