Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F10
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615...    29   1.7  
07_01_0773 + 5963165-5963306,5963440-5963489,5963580-5963645,596...    27   6.7  
05_05_0242 - 23559862-23560396,23560420-23560580                       27   6.7  
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414...    26   8.9  

>06_02_0369 -
           15260013-15260273,15260367-15260516,15261518-15261577,
           15262114-15262241,15262559-15262654,15262655-15263039
          Length = 359

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 196 VEYTFIDRHYLACTLHIICTY 258
           + +TF+  H+LAC   ++C Y
Sbjct: 130 INFTFLKSHFLACASVVVCLY 150


>07_01_0773 +
           5963165-5963306,5963440-5963489,5963580-5963645,
           5964162-5964188,5965320-5965375,5966613-5966681,
           5966901-5966995,5967141-5967251,5970545-5970879,
           5971218-5971253,5971254-5971421
          Length = 384

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 79  SFHIHNNFYWFLVLSHLFTVDQ*IQRLFSVTFVIRFTYC 195
           S +I   +YW      LF ++     L S+TF I FT+C
Sbjct: 101 SVNILTIYYWLNAWMVLFLIEY--SNLMSLTFPIFFTFC 137


>05_05_0242 - 23559862-23560396,23560420-23560580
          Length = 231

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 224 ILHARCTLFVLTYYILCMRKSVC 292
           +L    TLF+ TY I+C+   +C
Sbjct: 48  LLSLHATLFIYTYKIICIMTCIC 70


>05_04_0322 +
           20239793-20240127,20240176-20240728,20241317-20241425,
           20244456-20244723,20244943-20245197,20245594-20246539
          Length = 821

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 342 RIV*EVLNTISELKCDAQTLLRIHKI*YVSTNNVQRACKI 223
           R++  +  TI  L  D QTLL    +  +    + RACK+
Sbjct: 729 RVLTSMRGTIGYLAHDVQTLLDPESVDVIDLEELGRACKV 768


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,420,588
Number of Sequences: 37544
Number of extensions: 142572
Number of successful extensions: 222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)