Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F10
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy pro...    31   0.28 
AF101315-4|AAO25988.1|  719|Caenorhabditis elegans Hypothetical ...    31   0.28 
AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical ...    31   0.28 
AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine re...    29   1.1  
U80023-14|AAG24047.2|  334|Caenorhabditis elegans Serpentine rec...    27   3.4  
AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U40797-1|AAB37554.2|  250|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy
           protein 9 protein.
          Length = 947

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 76  YSFHIHNNFYWFLVLSHLFTVDQ*IQRLFSVTFVIRFTYCVEYTFI 213
           Y +H  N  Y  +VL  +F++   +Q +F ++F   FT CV Y F+
Sbjct: 144 YEYH-QNGGYLCIVLQKVFSL---LQFIFVMSFTTFFTQCVNYQFL 185


>AF101315-4|AAO25988.1|  719|Caenorhabditis elegans Hypothetical
           protein T22H9.2b protein.
          Length = 719

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 76  YSFHIHNNFYWFLVLSHLFTVDQ*IQRLFSVTFVIRFTYCVEYTFI 213
           Y +H  N  Y  +VL  +F++   +Q +F ++F   FT CV Y F+
Sbjct: 144 YEYH-QNGGYLCIVLQKVFSL---LQFIFVMSFTTFFTQCVNYQFL 185


>AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical
           protein T22H9.2a protein.
          Length = 880

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 76  YSFHIHNNFYWFLVLSHLFTVDQ*IQRLFSVTFVIRFTYCVEYTFI 213
           Y +H  N  Y  +VL  +F++   +Q +F ++F   FT CV Y F+
Sbjct: 144 YEYH-QNGGYLCIVLQKVFSL---LQFIFVMSFTTFFTQCVNYQFL 185


>AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine
           receptor, class t protein67 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 219 TLSCMHVAHYLYLHIIFCVCAK 284
           T+ C+ ++++ YL IIF +C+K
Sbjct: 185 TVPCLAISYFAYLTIIFLICSK 206


>U80023-14|AAG24047.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein234 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 49  CIILFIYICYSFHIHNNFYWFLVLSH 126
           CI+ F+Y  +    HNN  +F +  H
Sbjct: 255 CIVTFVYFHHQNQFHNNLIFFALAIH 280


>AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical
           protein C52E2.4 protein.
          Length = 658

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 229 ACTLHIICTYILYFVYAQKCLRVTL*LRYRIKDFLNNT 342
           ACTLH+   ++    +A KC   +  LR  I     NT
Sbjct: 125 ACTLHLQADHVSQLRFALKCFNPSKLLRLHISGSNRNT 162


>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 52  IILFIYICYS--FHIHNNFYWFLVLSHLFTVDQ*IQRLFSVTFVIRFTYC 195
           +   + +CY   + I  NF+W    S++F +   +  +     +I   YC
Sbjct: 27  LFAILMLCYDKLYPIIKNFFWMARTSYIFFISLVVFLIIQYESLINLMYC 76


>U40797-1|AAB37554.2|  250|Caenorhabditis elegans Hypothetical
           protein C28C12.11 protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +1

Query: 73  CYSFHIHNNFYWFLVLSHLFTVDQ*IQRLFSVTFVIRFTYCVEYTFIDRHYLACTLHIIC 252
           C+   +H+  + F    +L T D  I     VT   R  +   Y+F D  YL     + C
Sbjct: 47  CHLHPVHHPNFSFT--ENLKTNDHLIDPSHQVTICHRLKWS-HYSFWDSMYLILLPALTC 103

Query: 253 TYILYFVYAQKC 288
            +++++   + C
Sbjct: 104 VFLIFYTVLEIC 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,344,710
Number of Sequences: 27780
Number of extensions: 163801
Number of successful extensions: 456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)