Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F10
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 154 RLFSVTFVIRFTYCVEYTFIDRHYLACTLHII 249
           R+F  T +  F+YC+    I  +Y     H++
Sbjct: 209 RIFVAT-IFTFSYCIPMILIIYYYSQIVSHVV 239


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 52  IILFIYICYS-FHIHNNFYWFLVLSHLFTVDQ*IQR 156
           II   +IC++ +++ + +YW +  +  + +DQ IQ+
Sbjct: 265 IIAVFFICWTPYYVMSLWYW-IDRNSAYKIDQRIQK 299


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 245 LFVLTYYILCMRKSVCASHF 304
           L +  YYI C   SV  +HF
Sbjct: 182 LAIKVYYISCPEISVNFAHF 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,876
Number of Sequences: 438
Number of extensions: 2332
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)