Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F09
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.059
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.14
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 0.96
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.2
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 3.9
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 5.1
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 25 5.1
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 5.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 6.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.8
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 9.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.0
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 9.0
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 9.0
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.9 bits (69), Expect = 0.059
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -3
Query: 315 TTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTS 136
+TR T S+ S SV T S ++ + S+ V P ++T ++ + SA+ L++
Sbjct: 441 STRVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSS-SASSPQSTLST 499
Query: 135 SRRQRPQVSWRVVDTNSA-KLTSNSTPT 55
S +VS ++ +SA TS+STP+
Sbjct: 500 SSEVVSEVSSTLLSGSSAIPSTSSSTPS 527
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.14
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Frame = -3
Query: 315 TTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTS 136
+T ++P S S T S PP + T P T+TS T P A + TS
Sbjct: 270 STDTNSSPLPTTSTSCTTST-SIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTS 328
Query: 135 SRRQRPQVSWRVVDTNSAKLTSNS----TPTGPKK*TRISMSP 19
S P S + S T NS TPT P T + +P
Sbjct: 329 S-SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTP 370
Score = 29.5 bits (63), Expect = 0.32
Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Frame = -3
Query: 315 TTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTS 136
+T ++P + S S T S PP + T P T+TS T P A + TS
Sbjct: 324 STGTSSSPLPSTSTSCTTST-SIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTS 382
Query: 135 SRRQRPQVSWRVVDTNSAKL--TSNS-TPTGPKK*TRISMSP*NQPSC 1
S P +S T S + T NS TP P S +P +C
Sbjct: 383 S---SPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNC 427
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 0.96
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Frame = -3
Query: 318 PTTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHV--TPITTTSLAQTRPSAALSDVD 145
PT+ +TP S+ + + A S P ++ T+A TP+++ + + T SA+ + +
Sbjct: 416 PTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVN-STTATSASSTPLT 474
Query: 144 LTSSRRQRPQVSWRVVDTNSAKLTS-NSTP-TGPKK*TRISMS 22
+S S + NS TS +STP T T S+S
Sbjct: 475 SVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVS 517
Score = 27.1 bits (57), Expect = 1.7
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Frame = -3
Query: 312 TRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHV--TPI------TTTSLAQTRPSAAL 157
T +TP ++ + + A S P + TSA TP+ T+TS++ T PS
Sbjct: 352 TSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNT 411
Query: 156 SDVDLTSSRRQRPQVSWRVVDTNSAKLTSNST 61
S V TSS P S SA T S+
Sbjct: 412 SSVLPTSSVSSTPLSSANSTTATSASSTPLSS 443
Score = 26.6 bits (56), Expect = 2.2
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Frame = -3
Query: 312 TRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHV--TPI------TTTSLAQTRPSAAL 157
T +TP ++ + + A S P + TSA TP+ T+TS++ T PS
Sbjct: 466 TSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNT 525
Query: 156 SDVDLTSSRRQRPQVSWRVVDTNSAKLT 73
S V TSS P S SA T
Sbjct: 526 SSVLPTSSVSSTPLSSANSTTATSASST 553
Score = 26.2 bits (55), Expect = 2.9
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Frame = -3
Query: 297 TPCSAFSRSVAYHTYSGPPAAHEITSAPHVTP------ITTTSLAQTR-PSAALSDVDLT 139
T S+ + S T S P + +TS+ + T++SLA + S++L+ +T
Sbjct: 86 TSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSIT 145
Query: 138 SSRRQRPQVSWRVVDTNSAKLTSNSTPT 55
SS + + ++S T+++TPT
Sbjct: 146 SSSLASSSTTSSSLASSSTNSTTSATPT 173
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 2.2
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = -3
Query: 318 PTTRKMNTPCSAFSRSVA-YHTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDL 142
PTT + S+FS S + ++SG A ++S+ + TTT + T +
Sbjct: 519 PTTVSTSGSVSSFSSSPSPTSSFSGTSA---LSSSSNEETTTTTQVTYTTSPEETTTTMT 575
Query: 141 TSSRRQRPQVSWRVVDTNSAKLTSNST 61
T++ RP+ + V T S S S+
Sbjct: 576 TTTCSSRPEETISTVSTTSTVSESGSS 602
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 252 SGPPAAHEITSAPHVTPITTTSLAQTRPSAALS 154
SGPP ++ ++AP TP + S A P+ A S
Sbjct: 60 SGPPPSYSNSAAP-ATPAASASSAAPAPAPAAS 91
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 76 DEQQHADGPEEVDKNLHVPVKPALV 2
DE HA + DKN +P P L+
Sbjct: 88 DEASHASSSDSSDKNPDIPSSPLLM 112
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 124 EAAGQLARSGHEQRQVDEQQHADGPEEVDKN 32
E ++ GH Q Q +EQ +++ P E++KN
Sbjct: 425 EIITEVFEQGHSQNQTEEQGNSNAP-ELNKN 454
>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 242 GGPEYVWYATDLLNALQGVFIFLVVGCQ 325
GGP Y+W+A + + + LV+ Q
Sbjct: 401 GGPSYIWWALHISVCVLTILRLLVISLQ 428
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -3
Query: 282 FSRSVAYHTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWR 103
++ SVA Y+ A + I P T+TS+A T ++ S +TSS +
Sbjct: 118 YTSSVACFPYATSDAPNPI---PRGDSATSTSIAPTYSASDSSATTITSSSPSTSIIGTG 174
Query: 102 VVDTNSAKLTSNSTP 58
DT+ + + TP
Sbjct: 175 STDTSVSSTLTYHTP 189
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 362 AWCARGNADERAGARVTH 415
AWC G+ D ++ R TH
Sbjct: 2423 AWCCTGDTDAKSRERFTH 2440
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 36 LSTSSGPSACCCSSTWRCSCP-LRAS*PA 119
L+ SSGP + S CSCP +++S P+
Sbjct: 300 LTVSSGPLSTASSIPSNCSCPSVKSSGPS 328
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 177 TRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLTS-NSTPTGPKK*TRISMSP 19
++PSA S + TSS+ Q+P+ S ++ N+A + + N T + +S P
Sbjct: 112 SKPSAN-SSAERTSSQHQKPETSSQIGKDNAAPVENVNEKSTSQETAPPVSTVP 164
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = -3
Query: 228 ITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDT----NSAKLTSNST 61
+ S P+ + + + A PSA +S +D + ++RP + T NS+ ++SN T
Sbjct: 5 VNSNPNASESISGNSAFNFPSAPVSSLDTNNYGQRRPSLLSGTSPTSSFFNSSMISSNYT 64
Query: 60 -PTGPKK 43
P G K
Sbjct: 65 FPHGSNK 71
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 204 PITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLTSNSTP 58
P+T T L + S A + +T+ PQVS + + S T+ S P
Sbjct: 272 PVTKTPLEEANSSPAAQNQHITTVDHVHPQVS--MTPSLSTNNTATSVP 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,650
Number of Sequences: 5004
Number of extensions: 23067
Number of successful extensions: 112
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -