Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F09
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1107 - 24024387-24024497,24025799-24026410 32 0.24
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 30 0.97
07_01_0738 + 5626062-5626862 29 1.7
02_03_0072 + 14761373-14761599,14761672-14761773,14762281-14762452 29 1.7
10_08_0950 + 21764902-21765912 29 3.0
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 29 3.0
09_02_0575 + 10845261-10847057 28 3.9
06_01_0963 + 7411944-7412396,7412677-7412736,7412828-7413010,741... 28 3.9
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 28 3.9
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 28 3.9
04_01_0607 + 7955026-7955664 28 3.9
03_02_0012 - 4914223-4914468,4914511-4914587,4914671-4914732,491... 28 3.9
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 28 3.9
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 28 3.9
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 28 5.2
08_01_0136 - 1077800-1077811,1077929-1078046,1079410-1079549,107... 28 5.2
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 28 5.2
03_06_0730 + 35775439-35775726,35777113-35778345 28 5.2
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 28 5.2
08_01_0434 + 3809681-3810016,3810039-3811100 27 6.8
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473... 27 6.8
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799... 27 6.8
11_01_0498 - 3828516-3829058 27 9.0
09_06_0127 + 21019266-21019670 27 9.0
06_03_0467 - 21066354-21066501,21066831-21066893,21067223-210672... 27 9.0
02_02_0219 + 7985152-7985575,7985818-7985894,7986067-7986127,798... 27 9.0
01_06_1682 - 39130696-39131705,39132355-39132583 27 9.0
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 32.3 bits (70), Expect = 0.24
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = -3
Query: 246 PPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLTSN 67
PPA+ + T AP P TTT A + P AA T + + P T + S
Sbjct: 36 PPASSKKTPAPAAAPTTTTPPAASTPPAAAPTTPATPAPAEAPTTP---APTKAPPTKST 92
Query: 66 STPTGPKK*TRISMSP*NQP 7
P K + + P + P
Sbjct: 93 KAPAPAPKAAKATPPPASSP 112
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 30.3 bits (65), Expect = 0.97
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = -2
Query: 424 RGGVRDARPRPLVRVTASAPRAGAPLERGPRVRLTSHHQEDEHPLXXXXXXXXVP-HVLG 248
RG R P R + APR+ +P R P V+ TS H+E P+ P +G
Sbjct: 233 RGSPPRRRSPPARRERSPAPRSRSPRRRSP-VKTTSSHRE-RSPVRRNGSPRRSPVRSIG 290
Query: 247 SS---GRPRDHVRAPRXXXXXHQLGADSPQRR 161
S R ++ VR+P+ + + SP R+
Sbjct: 291 RSPQRDRVKEQVRSPKQAQSRSR--SPSPARK 320
>07_01_0738 + 5626062-5626862
Length = 266
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = -3
Query: 309 RKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTS----LAQTRPSAALS---D 151
+ M P FS +V +H S PAA TS V+P + S A + A+S +
Sbjct: 121 KSMPQPTITFSTAVYHHARSTVPAAATSTSTSGVSPSRSNSSSLNFATNLSNFAMSGGEE 180
Query: 150 VDLTSSRRQRPQVSW 106
+ L SS++Q Q SW
Sbjct: 181 LQLASSQQQYDQ-SW 194
>02_03_0072 + 14761373-14761599,14761672-14761773,14762281-14762452
Length = 166
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 69 CSSTWRCSCPLRAS*PAASGGATRSSRHQRGRRWGE 176
CS+ WR C L + AA+ + H + + WGE
Sbjct: 68 CSTRWRIMCKLTSKRFAATKDLISAMSHSKKQAWGE 103
>10_08_0950 + 21764902-21765912
Length = 336
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 252 SGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDT 91
S PP + S+P + P+ + A +AA+S S R+ P W +T
Sbjct: 5 SSPPPNPDALSSPDLPPLAAPAAAAAAAAAAVSSGGAGGSGRRLPPPCWTHEET 58
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = -2
Query: 421 GGVRDARPRPLVRVTASAPRAGA--PLERGPR-VRLTSHHQEDEHPLXXXXXXXXVPHVL 251
GG D P P++++ + P A A P P V S +++E H L
Sbjct: 146 GGAPDPSPNPIIKIKSKGPAAAAASPSPASPSPVSSPSSEEDEEEEAAADAGRSRSLHGL 205
Query: 250 GSSG 239
S+G
Sbjct: 206 ISNG 209
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -3
Query: 255 YSGPPAAHEITSAPHVT--PITTT---SLAQTRPSAALSDVDLTSSRRQRPQVSWRV 100
Y GPPAA + + AP P T L+ AL+D+DL + RQ P V V
Sbjct: 178 YQGPPAAEKPSGAPPAATPPARNTGRLGLSDREADDALNDIDLAMA-RQLPVVDTTV 233
>09_02_0575 + 10845261-10847057
Length = 598
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 21 GTWRFLSTSSGPSACCCSSTWR 86
G W S+S PS+C SS+WR
Sbjct: 69 GGWSSGSSSPAPSSCSSSSSWR 90
>06_01_0963 +
7411944-7412396,7412677-7412736,7412828-7413010,
7413259-7413339,7414219-7414541,7414961-7415084
Length = 407
Score = 28.3 bits (60), Expect = 3.9
Identities = 25/71 (35%), Positives = 34/71 (47%)
Frame = -3
Query: 318 PTTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLT 139
PTTR +TP S +R++ G AA E+T TPI T + R SA L
Sbjct: 14 PTTRSSSTPGSGGARAI------GGVAA-EVTDYSIATPIVTGTARWFRDSADLVAFREG 66
Query: 138 SSRRQRPQVSW 106
RR+R + S+
Sbjct: 67 GGRRRRRRHSF 77
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 28.3 bits (60), Expect = 3.9
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = -2
Query: 442 AARGQVRGGVRDARPRPLVRVTASAPRAGAPLERGPRVRLTSHHQEDEHPLXXXXXXXXV 263
+ R + R RD P R + A R+ +P R P V+ TS H+E P+
Sbjct: 14 SGRSRSRSPARDRGSPPRRRERSPAARSRSPRRRSP-VKSTSSHRE-RSPVRRNGSPRRS 71
Query: 262 P-HVLGSS---GRPRDHVRAPR 209
P +G S R ++ VR+P+
Sbjct: 72 PVRSIGRSPQRDRVKEQVRSPK 93
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 69 CSSTWRCSCPLRAS*PAASGGATRSSRHQRGRRWGE 176
C + R + A+ P A+ A S QRGR WG+
Sbjct: 147 CGAASRRAAEAEAAYPRAAAAAAAESGLQRGRGWGD 182
>04_01_0607 + 7955026-7955664
Length = 212
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 117 AASGGATRSSRHQRGRRWGESAPSWW 194
AA RS R RGRRWG WW
Sbjct: 184 AARRAVERSRRRWRGRRWG-GRRRWW 208
>03_02_0012 -
4914223-4914468,4914511-4914587,4914671-4914732,
4914825-4915018,4915153-4915439,4915520-4915646,
4916216-4916446,4917210-4917384,4917461-4917668,
4917745-4917793,4918016-4918300
Length = 646
Score = 28.3 bits (60), Expect = 3.9
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = +2
Query: 44 FFGPVGVLLLVNLALFVSTTR-QLTCGLWRRDEVKS-TSERAALGRVCAKLVVVMGVTWG 217
++ PV +L + L+ Q C LW+ D++ T + LG + + + + V
Sbjct: 397 YYTPVSILASIILSALPGLINVQEVCFLWKVDKMDFLTCMGSFLGVLFGSVEIGLSV--- 453
Query: 218 ADVISWAAGGPEYVWYATDLLNALQGVFIFLVVGCQP 328
A ++S+A + +W ++L LQG IF V P
Sbjct: 454 ALLVSFAKIIIQSIWPQVEILGRLQGTEIFCNVKQYP 490
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 117 AASGGATRSSRHQRGRRWGESAPSWWW 197
A GG R R G R G WWW
Sbjct: 20 AGGGGGGRGGRGGGGGRGGSGRLGWWW 46
>01_05_0251 + 19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 32 ILVYFFGPVGVLLLVNLALFVSTTRQLTCG 121
+LV FG +++ V+LALF TRQL G
Sbjct: 950 LLVMVFGVFALIVYVSLALFDHQTRQLFVG 979
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = -3
Query: 294 PCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQ 115
P + S A+H+ PP A +A HV+ ++++S S + D TSS R +P
Sbjct: 147 PLITSTSSSAHHSL--PPHA---AAAAHVSLVSSSSTDANANSVVVGDDQCTSSCRTQPH 201
Query: 114 VSWRVVDTNSAKLTSNST 61
S ++S+ +S+ +
Sbjct: 202 SSSSSSSSSSSSASSSGS 219
>08_01_0136 -
1077800-1077811,1077929-1078046,1079410-1079549,
1079627-1080313
Length = 318
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 27 WRFLSTSSGPSACCCSSTWRCSCPLRAS*PAASGGATRSS 146
W + S+SS + ++T SC AS A+SGGA S
Sbjct: 146 WVYCSSSSPSATTTTTTTTSSSCSSAASTGASSGGAAARS 185
>05_01_0112 -
757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 148 RLDLVAPPEAAGQLARSGHEQRQVDEQQHADGPEEVDKNLHVPVK 14
R+ + EAAG++ + E+ + + + +G EE VP K
Sbjct: 88 RIRRLMETEAAGEVGEAAAEEEEEEHEAETEGEEEAAAEEQVPAK 132
>03_06_0730 + 35775439-35775726,35777113-35778345
Length = 506
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 33 FLSTSSGPSACCCSSTWRCSCPL 101
+++TSSG SA C +ST + CP+
Sbjct: 333 YVATSSGLSAICSTSTPQIQCPV 355
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 119 GLWRRDEVKSTSERAALGRVCAKLVVVMGVTWGADVISWAAGGPEYVWYAT 271
G W+ EVK + + K V V G + I WAA G EYV +T
Sbjct: 59 GQWKHHEVKVKDSKTLI--FGTKEVAVFGCR-NPEEIPWAAAGAEYVVEST 106
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 84 RCSCPLRAS*PAASGGATRSSRHQRGRRWGESAP 185
R C L A PA+SGG R +R R G S P
Sbjct: 47 RLPCSLPALPPASSGGGEAGERGRRRGRLGFSPP 80
>06_03_0576 -
22443668-22444146,22446239-22446393,22447251-22447331,
22448475-22448618,22449670-22449695,22449748-22449811,
22449905-22449996,22450550-22450780,22451238-22451678,
22451754-22452293
Length = 750
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 130 PPEAAGQLARSGHEQRQVDEQQHADGPEEVD 38
PPEA +L +Q DE+ HAD E+D
Sbjct: 397 PPEA--ELPEQDEDQEDPDERHHADSDVEMD 425
>01_06_1440 +
37378121-37378958,37379344-37379494,37379567-37379936,
37380021-37380431,37380522-37380820,37380897-37381155,
37381248-37381497,37381744-37381875,37381936-37382208,
37383023-37383267
Length = 1075
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 403 RPRPLVRVTASAPRAGAPLERGPRV 329
+PRP + PR AP+ GPR+
Sbjct: 839 QPRPRAPTVGAGPRPTAPISHGPRL 863
>11_01_0498 - 3828516-3829058
Length = 180
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 309 WWWDVSRTRGPRSSGAPARGA 371
WWW G R SGA RG+
Sbjct: 83 WWWRDDGCAGARRSGAGGRGS 103
>09_06_0127 + 21019266-21019670
Length = 134
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 300 NTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTSLAQT-RPSAALSDVDLTSSRRQ 124
+T + + S A S ++ +AP P T + RP+AA S V + RR+
Sbjct: 47 STSTTGTTPSAAASGSSSTASSSRSVNAPPPPPTPTAAPPPLPRPAAAESTVVVREERRE 106
Query: 123 RPQVSW 106
P+ W
Sbjct: 107 HPEEDW 112
>06_03_0467 -
21066354-21066501,21066831-21066893,21067223-21067291,
21067666-21067742,21069451-21069558,21070008-21070274,
21071964-21072607,21073370-21073550,21073688-21073834
Length = 567
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -2
Query: 394 PLVRVTASAP-RAGAPLERGPRVRLTSHHQEDEHP 293
P+ R+ + P G + R P HHQEDE P
Sbjct: 384 PIARLMSPPPAHQGTVMLRQPEPPYIYHHQEDERP 418
>02_02_0219 +
7985152-7985575,7985818-7985894,7986067-7986127,
7986276-7986519,7986613-7987006,7987292-7987729
Length = 545
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 216 PHVTPITTTSLAQTRPSA-ALSDVDLTSSRRQRPQVSWRVVDTNSAKLTSNSTPT 55
P +TP TTT+ A RP + D+ LT S P + D AK + ST T
Sbjct: 409 PRMTPTTTTTPAGKRPPEWSPPDLQLTLS----PTTAPAAADGGGAKRSKTSTTT 459
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 318 PTTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTP 202
P N+P + S ++Y PP AH+ P+ +P
Sbjct: 277 PPPYYFNSPPPQYQHSPPANSYVSPPLAHQYPPPPYKSP 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,818,077
Number of Sequences: 37544
Number of extensions: 226124
Number of successful extensions: 1194
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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