Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F09
(518 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec... 37 0.010
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l... 37 0.010
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 32 0.28
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 32 0.28
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 31 0.49
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 31 0.49
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 31 0.49
U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical pr... 30 0.86
AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-li... 30 0.86
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 30 1.1
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical pr... 28 3.5
DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-lik... 28 3.5
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 28 4.6
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 28 4.6
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 28 4.6
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 28 4.6
AL021492-1|CAA16377.1| 179|Caenorhabditis elegans Hypothetical ... 28 4.6
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 28 4.6
Z81104-7|CAB70253.2| 647|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 6.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 8.0
>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin receptor
protein 2 protein.
Length = 1338
Score = 36.7 bits (81), Expect = 0.010
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = +2
Query: 44 FFGPVGVLLLVNLALFVSTTRQLTCGLWRRDEVKSTSERAALGRVCAKLVVVMGVTWGAD 223
F P+ V++ N+ +F+ ++ + RD K L + A L+ ++G+TW
Sbjct: 1044 FVAPIIVIIAANI-IFLLIALKVVLSVQSRDRTKWGRIIGWL-KGSATLLCLLGITWIFG 1101
Query: 224 VISWAAGGP--EYVWYATDLLNALQGVFIFLV 313
++ GG + W T +LN QG+FIF++
Sbjct: 1102 FLTAVKGGTGTAFAWIFT-ILNCTQGIFIFVL 1132
>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
protein LAT-2 protein.
Length = 1338
Score = 36.7 bits (81), Expect = 0.010
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = +2
Query: 44 FFGPVGVLLLVNLALFVSTTRQLTCGLWRRDEVKSTSERAALGRVCAKLVVVMGVTWGAD 223
F P+ V++ N+ +F+ ++ + RD K L + A L+ ++G+TW
Sbjct: 1044 FVAPIIVIIAANI-IFLLIALKVVLSVQSRDRTKWGRIIGWL-KGSATLLCLLGITWIFG 1101
Query: 224 VISWAAGGP--EYVWYATDLLNALQGVFIFLV 313
++ GG + W T +LN QG+FIF++
Sbjct: 1102 FLTAVKGGTGTAFAWIFT-ILNCTQGIFIFVL 1132
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -3
Query: 300 NTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTS----LAQTRPSAALSDVDLTS 136
N P S S S ++H + P + + SAP P TT S +A + PS++ S+ +S
Sbjct: 1372 NRPSSLRSTSNSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSS 1430
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -3
Query: 300 NTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTS----LAQTRPSAALSDVDLTS 136
N P S S S ++H + P + + SAP P TT S +A + PS++ S+ +S
Sbjct: 1372 NRPSSLRSTSNSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSS 1430
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
protein B0457.1b protein.
Length = 1012
Score = 31.1 bits (67), Expect = 0.49
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Frame = +2
Query: 11 WFYGDMEILVYFFGPVGVLLLVNLALFVST---TRQLTCG--LWRRDEVKSTSERAALGR 175
W + +F GP + N + V T Q T G L R +V S +
Sbjct: 684 WLSTQNNFIWFFAGPACFIFCANSLVLVKTLCTVYQHTSGGYLPCRHDVDSGRSIRNWVK 743
Query: 176 VCAKLVVVMGVTWGADVISWAAGGPEYVW-YATDLLNALQGVFIFL 310
L ++GVTW + W V Y + N+LQG+FIFL
Sbjct: 744 GSLALASLLGVTWIFGLF-WVEDSRSIVMAYVFTISNSLQGLFIFL 788
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical protein
B0457.1a protein.
Length = 1014
Score = 31.1 bits (67), Expect = 0.49
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Frame = +2
Query: 11 WFYGDMEILVYFFGPVGVLLLVNLALFVST---TRQLTCG--LWRRDEVKSTSERAALGR 175
W + +F GP + N + V T Q T G L R +V S +
Sbjct: 686 WLSTQNNFIWFFAGPACFIFCANSLVLVKTLCTVYQHTSGGYLPCRHDVDSGRSIRNWVK 745
Query: 176 VCAKLVVVMGVTWGADVISWAAGGPEYVW-YATDLLNALQGVFIFL 310
L ++GVTW + W V Y + N+LQG+FIFL
Sbjct: 746 GSLALASLLGVTWIFGLF-WVEDSRSIVMAYVFTISNSLQGLFIFL 790
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 31.1 bits (67), Expect = 0.49
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Frame = +2
Query: 11 WFYGDMEILVYFFGPVGVLLLVNLALFVST---TRQLTCG--LWRRDEVKSTSERAALGR 175
W + +F GP + N + V T Q T G L R +V S +
Sbjct: 684 WLSTQNNFIWFFAGPACFIFCANSLVLVKTLCTVYQHTSGGYLPCRHDVDSGRSIRNWVK 743
Query: 176 VCAKLVVVMGVTWGADVISWAAGGPEYVW-YATDLLNALQGVFIFL 310
L ++GVTW + W V Y + N+LQG+FIFL
Sbjct: 744 GSLALASLLGVTWIFGLF-WVEDSRSIVMAYVFTISNSLQGLFIFL 788
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 31.1 bits (67), Expect = 0.49
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Frame = +2
Query: 11 WFYGDMEILVYFFGPVGVLLLVNLALFVST---TRQLTCG--LWRRDEVKSTSERAALGR 175
W + +F GP + N + V T Q T G L R +V S +
Sbjct: 686 WLSTQNNFIWFFAGPACFIFCANSLVLVKTLCTVYQHTSGGYLPCRHDVDSGRSIRNWVK 745
Query: 176 VCAKLVVVMGVTWGADVISWAAGGPEYVW-YATDLLNALQGVFIFL 310
L ++GVTW + W V Y + N+LQG+FIFL
Sbjct: 746 GSLALASLLGVTWIFGLF-WVEDSRSIVMAYVFTISNSLQGLFIFL 790
>U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical protein
F31D5.5 protein.
Length = 1788
Score = 30.3 bits (65), Expect = 0.86
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 194 VVMGVTWGADVISWAAGGPEYVWYATDLLNALQGVFIFLV 313
V MG+ WG + I GP Y LL QG+ +FL+
Sbjct: 1714 VAMGLPWGIEFILIGVAGPSPWNYIFVLLLGTQGIDLFLI 1753
>AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-like
protein MTH-1 protein.
Length = 1757
Score = 30.3 bits (65), Expect = 0.86
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 194 VVMGVTWGADVISWAAGGPEYVWYATDLLNALQGVFIFLV 313
V MG+ WG + I GP Y LL QG+ +FL+
Sbjct: 1683 VAMGLPWGIEFILIGVAGPSPWNYIFVLLLGTQGIDLFLI 1722
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = -3
Query: 318 PTTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTSLAQT-RPSAALSDVDL 142
PTT +T + +++ A P E+T+ T TT+S T +P+ L D +
Sbjct: 255 PTTTAESTTKKSTTKAPATTEEPTPTTTEEVTTTEAETSTTTSSETSTEKPTTPLIDNKI 314
Query: 141 TSSRRQRPQVS-WRVVDTNSAKLTSNSTPTGPKK*TRISMS 22
+P+ + + V T T+ TP K ++++S
Sbjct: 315 AGPATGKPETTHFPVTGTTPNFDTATETPFVAKSEDKMTLS 355
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 29.9 bits (64), Expect = 1.1
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Frame = -3
Query: 237 AHEITSAPHVTPITTTSLAQTRPSAALS----DVDLTS-----SRRQRPQVSWRVVDTNS 85
+H T P TP+ T S +Q+ PSA L+ ++ TS S QRP S
Sbjct: 906 SHTTTVEPS-TPLETASTSQSTPSATLTSTTENIPSTSKIPETSTTQRPTSPILTSGATS 964
Query: 84 AKLTSNSTPTGPKK*TRISMSP*NQP 7
++ ST T P T ++ P P
Sbjct: 965 TSSSTESTTTSPTTSTTTTLPPTTTP 990
>Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical
protein F10A3.4 protein.
Length = 569
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -3
Query: 225 TSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLTSNSTPTG 52
T+ TP+ TT++ TRP+ T ++ Q VV T + + N T TG
Sbjct: 477 TTTTTQTPLPTTTILTTRPALTTQSTVFT-TQAVTTQQQTTVVKTPTTQTPQNQTTTG 533
>Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 130 PPEAAGQLARSGHEQRQVDEQQHADGPEEVDKNLHVPVKPA 8
PP+A+G +A H Q + G EV H V+P+
Sbjct: 311 PPQASGAVAGGAHSAGQYHAESKLGGGREVWFGFHQSVRPS 351
>Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 130 PPEAAGQLARSGHEQRQVDEQQHADGPEEVDKNLHVPVKPA 8
PP+A+G +A H Q + G EV H V+P+
Sbjct: 311 PPQASGAVAGGAHSAGQYHAESKLGGGREVWFGFHQSVRPS 351
>DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-like
protein.
Length = 1010
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 130 PPEAAGQLARSGHEQRQVDEQQHADGPEEVDKNLHVPVKPA 8
PP+A+G +A H Q + G EV H V+P+
Sbjct: 319 PPQASGAVAGGAHSAGQYHAESKLGGGREVWFGFHQSVRPS 359
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 39 STSSGPSACCCSSTWRCSCPLRAS*PAASGGATRSSRHQRGRRWGESAPS 188
STSSGPS S+ S P S P+ + G + +S + G S S
Sbjct: 558 STSSGPSTASRSTVSTTSGPSTTSGPSTTSGPSTTSGSTKSTTSGPSTTS 607
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.9 bits (59), Expect = 4.6
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 2/101 (1%)
Frame = -3
Query: 315 TTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTS 136
TT TP +R+ + P T+ TP+ TT LA TR S TS
Sbjct: 284 TTAAPTTPRLTTARATTPLATTSRPTTPSPTTPRATTPLATTPLATTRAPLPPSPPPRTS 343
Query: 135 SR--RQRPQVSWRVVDTNSAKLTSNSTPTGPKK*TRISMSP 19
R Q P T TP ++ + +P
Sbjct: 344 KRPVTQAPTTPRATTTRRPTTTTPRPTPRRTRRPKTTTAAP 384
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 27.9 bits (59), Expect = 4.6
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = -3
Query: 315 TTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTS 136
T+R +TP S + S T + A T+ TP TTT + + ++ ++ +TS
Sbjct: 215 TSRSTSTPSSTEASS----TVTSTTTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTS 270
Query: 135 SRRQRPQVSWRVVDTNSAKLTSNST 61
+ V V T +A TS ST
Sbjct: 271 TTVPTTTVV-TTVPTTTATSTSTST 294
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 27.9 bits (59), Expect = 4.6
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = -3
Query: 315 TTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTS 136
T+R +TP S + S T + A T+ TP TTT + + ++ ++ +TS
Sbjct: 197 TSRSTSTPSSTEASS----TVTSTTTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTS 252
Query: 135 SRRQRPQVSWRVVDTNSAKLTSNST 61
+ V V T +A TS ST
Sbjct: 253 TTVPTTTVV-TTVPTTTATSTSTST 276
>AL021492-1|CAA16377.1| 179|Caenorhabditis elegans Hypothetical
protein Y45F10D.2 protein.
Length = 179
Score = 27.9 bits (59), Expect = 4.6
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = -3
Query: 252 SGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLT 73
S PPA+ +SA +TP + A T P S + RQ+ Q T S T
Sbjct: 79 STPPASSASSSASSMTPTGNGAQASTIPMNQGSSTSMPV--RQKRQAVSTTTTTASPMST 136
Query: 72 SNSTPT 55
S+ TP+
Sbjct: 137 SSPTPS 142
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 27.9 bits (59), Expect = 4.6
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = -3
Query: 261 HTYSGPPAAHEITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSA 82
H + PPAA T P TP TTT+ T + AL T + + T +
Sbjct: 272 HYETVPPAAQT-TPQPPCTPRTTTTTTTTTTTTALPPCVYTPAPPATAPPATATPATQTP 330
Query: 81 KLTSNSTP---TGPKK*TRISMSP 19
+ S +TP T P++ T + P
Sbjct: 331 RTYSTTTPIKTTVPQQWTTLPPGP 354
>Z81104-7|CAB70253.2| 647|Caenorhabditis elegans Hypothetical
protein M199.3 protein.
Length = 647
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 248 PEYVWYATDLLNALQGVFIFLVVGCQPHAWAALKRCAGAWCAR 376
P + Y N L GVF+ + C W R +G +C R
Sbjct: 453 PTDITYTVRYENGLWGVFVESKIACPDDYWTYSPRESGDYCFR 495
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.5 bits (58), Expect = 6.1
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Frame = -3
Query: 318 PTTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHV----TPITTTSLAQTRPSAALSD 151
PTT T + + T + P E T+ P TP TTT T +
Sbjct: 78 PTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTTTPTTTTT 137
Query: 150 VDLTSSRRQRPQVSWRVVDTNSAKLTSNSTPT 55
T+ + + T + T+ +TPT
Sbjct: 138 ETTTTPTTTTTETTTTPTTTTTTPTTTTTTPT 169
Score = 27.1 bits (57), Expect = 8.0
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Frame = -3
Query: 315 TTRKMNTPCSAFSRSVAYHTYSGPPAAHEITSAPHVT---PITTTSLAQTRPSAALSDVD 145
TT T + +V T + P T+ P T P TTT+ A T +
Sbjct: 201 TTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPT 260
Query: 144 LTSSRRQRPQVSWRVVDTNSAKLTSNSTPTGPKK*TR 34
T+ +P + T T+ +T T K T+
Sbjct: 261 TTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTK 297
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = -3
Query: 228 ITSAPHVTPITTTSLAQTRPSAALSDVDLTSSRRQRPQVSWRVVDTNSAKLTSNSTPTGP 49
I+ P +PI +T+ A + + +SDV S+ P S S+ + +ST G
Sbjct: 1347 ISPVPTSSPIPSTTFASSTSGSTISDVSSVSTTSLAPLSSSLPSTVPSSTQSFSSTSEGS 1406
Query: 48 KK 43
K
Sbjct: 1407 SK 1408
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,847,364
Number of Sequences: 27780
Number of extensions: 150410
Number of successful extensions: 746
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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