Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F08
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   107   4e-25
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   107   4e-25
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   1.1  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   3.5  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    24   4.6  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    24   6.1  
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo...    24   6.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   8.1  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    23   8.1  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  107 bits (257), Expect = 4e-25
 Identities = 51/73 (69%), Positives = 57/73 (78%)
 Frame = +3

Query: 42  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPTTAFAPLRCLDEY 221
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FP          +EY
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHL---VSNEY 57

Query: 222 EQLSSEALEAGRI 260
           EQ++SEALEA RI
Sbjct: 58  EQITSEALEAARI 70


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  107 bits (257), Expect = 4e-25
 Identities = 51/73 (69%), Positives = 57/73 (78%)
 Frame = +3

Query: 42  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPTTAFAPLRCLDEY 221
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FP          +EY
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHL---VSNEY 57

Query: 222 EQLSSEALEAGRI 260
           EQ++SEALEA RI
Sbjct: 58  EQITSEALEAARI 70


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 120 PDPKIRIFDLGKKRA--TVDDFPTTAFAPLRCLDEYEQLSS 236
           PD K+R+FD    RA   +D+ P+ A   +  L E E   S
Sbjct: 257 PDCKVRVFDTKSGRAILELDENPSNAAKKVEALFEKEDTES 297


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 176 VIHCRSLFAQVENTDLWVRHTPT 108
           ++H  +LFA  EN D ++   PT
Sbjct: 345 ILHWNTLFANEENWDSYIPQDPT 367


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 99  SRFCRGVPDPKIRIFDLGKKRATVDDFP 182
           S FC   PDPK       K  A  DD P
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHP 111


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 123 DPKIRIFDLGKKRAT 167
           DPK+R+F    KRAT
Sbjct: 320 DPKLRVFPFTTKRAT 334


>SPAC9E9.14 |vps24||vacuolar sorting protein
           Vps24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -3

Query: 267 LTRYGLLPAPQNSA--ARTHQD 208
           LT+Y ++PAP   A  A TH++
Sbjct: 172 LTKYNVIPAPSEKAADAATHRE 193


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 177  FPTTAFAPLRCLDEYEQLSSEALE 248
            FPT    PLR  D +  L   ALE
Sbjct: 4779 FPTFNVVPLRVTDTFRPLGEIALE 4802


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 133 SVFSTWAKRERQWMTSPLLRLHRYVVLMSTSS 228
           S F T A   + W+TSP++R   +    S+SS
Sbjct: 90  SCFQTAAYIVQDWITSPIIRTLPFRSSSSSSS 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,579
Number of Sequences: 5004
Number of extensions: 24756
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)