Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F08
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 99 4e-22
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 93 4e-20
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 80 3e-16
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 27 3.1
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 27 4.1
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 27 4.1
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 26 5.4
05_03_0170 - 9132207-9133010,9133232-9133894 26 5.4
09_04_0381 + 17128437-17128655,17129250-17129331,17129409-171295... 26 7.2
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 25 9.5
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 25 9.5
06_01_1064 - 8609162-8610583 25 9.5
06_01_1060 + 8522131-8523606 25 9.5
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 25 9.5
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 25 9.5
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 99 bits (238), Expect = 4e-22
Identities = 48/73 (65%), Positives = 55/73 (75%)
Frame = +3
Query: 42 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPTTAFAPLRCLDEY 221
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP + E
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFP---YCVHLVSWEK 57
Query: 222 EQLSSEALEAGRI 260
E +SSEALEA RI
Sbjct: 58 ENVSSEALEAARI 70
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 93.1 bits (221), Expect = 4e-20
Identities = 44/69 (63%), Positives = 50/69 (72%)
Frame = +3
Query: 54 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPTTAFAPLRCLDEYEQLS 233
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFP E E +S
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHL---VSWEKENVS 368
Query: 234 SEALEAGRI 260
SEALEA RI
Sbjct: 369 SEALEAARI 377
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 80.2 bits (189), Expect = 3e-16
Identities = 39/66 (59%), Positives = 46/66 (69%)
Frame = +3
Query: 63 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPTTAFAPLRCLDEYEQLSSEA 242
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F E E ++SEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHL---VSWEKENVTSEA 60
Query: 243 LEAGRI 260
LEA RI
Sbjct: 61 LEAARI 66
>08_01_0003 +
30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 69 DNISLVGAPLCSPQRTSCR 13
+N S VG PL P+R +CR
Sbjct: 492 ENFSRVGKPLAKPRRRACR 510
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 183 TTAFAPLRCLDEYEQLSSEALEAGRI*LANQCTRRNRTAVK 305
TTA +P +YEQ S A + G I + ++ +R R AVK
Sbjct: 36 TTAASPAPA--DYEQEVSSAPQGGYIPVLSKAAKRRRAAVK 74
>08_02_0076 + 11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 75 NIDNISLVGAPLCSPQRTSCRIL 7
N+DNI ++ P+CS Q TS +IL
Sbjct: 1412 NVDNIDVLCVPICS-QLTSLKIL 1433
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 72 YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRA 164
+C +PYPK VPD ++ GK +A
Sbjct: 395 FCMYEPYPKGSLEDDVPDTTVQDMLCGKAKA 425
>05_03_0170 - 9132207-9133010,9133232-9133894
Length = 488
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 78 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPTTAFAPLRCLD 215
+ P+ ++ RG P P R ++T D F + A+ RC+D
Sbjct: 199 RQTPWQEAHASRGPPRPLRRCIQGLDPKSTADLFSSAAWVGERCVD 244
>09_04_0381 +
17128437-17128655,17129250-17129331,17129409-17129564,
17129646-17130431,17130743-17131094,17131467-17131548,
17131756-17131833,17132041-17132055
Length = 589
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -3
Query: 261 RYGLLPAPQNSAARTHQDNVTVQTQ*WGSHPLSLSFCPSRKYGSLGQAHP 112
R + P+P+ R H+ +V + W S + L+ +R+Y A P
Sbjct: 216 RSDVFPSPRTPNYRRHRSSVFGYQKGWSSERVPLASKGNRRYPGSSMAFP 265
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 45 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIF 143
GRR R R C+ + P++RF R V D F
Sbjct: 49 GRRGRRPRRACEEEEKPQARFRRVVADNSYSAF 81
>07_01_0251 +
1874148-1874311,1874367-1874429,1874484-1874709,
1874830-1875081,1875158-1875267,1875720-1875815,
1875898-1875985,1876246-1876475,1876745-1876929,
1877136-1877335,1877592-1877924,1878058-1878159,
1878869-1879166,1879626-1879774,1879859-1880143,
1880531-1880728
Length = 992
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 139 FSTWAKRERQWMTSPLLRLHRY 204
FS W K + + S LLR+H++
Sbjct: 185 FSLWKKHDDNSLISKLLRMHKF 206
>06_01_1064 - 8609162-8610583
Length = 473
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 116 TPTKPRFRIRFILTISITSRWSAPHCVLHK 27
+P K RFR++ ++ + SA HCV +
Sbjct: 266 SPAKARFRLKHVVRTLTGAEDSAHHCVFQE 295
>06_01_1060 + 8522131-8523606
Length = 491
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 116 TPTKPRFRIRFILTISITSRWSAPHCVLHK 27
+P K RFR++ ++ + SA HCV +
Sbjct: 284 SPAKARFRLQHVVRTLTAAEDSAYHCVFQE 313
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 48 RRPARCYRYCKNKPYPKSRFCRGVPDPKIR 137
R P++ +RY + P P++R R P P I+
Sbjct: 1026 RAPSQDWRYTPDVPRPRTRGRRRGPSPAIQ 1055
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 179 EVIHCRSLFAQVENTDLWVRHTPTKP 102
+V+HC S + + LW+R P P
Sbjct: 473 DVVHCPSCSSYLHPPRLWLRAAPESP 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,021,367
Number of Sequences: 37544
Number of extensions: 179364
Number of successful extensions: 446
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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