Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F08
(311 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 110 2e-25
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z81097-10|CAB03169.1| 492|Caenorhabditis elegans Hypothetical p... 27 2.8
U23511-12|AAC46798.2| 610|Caenorhabditis elegans Hypothetical p... 27 2.8
DQ384615-1|ABD34785.1| 492|Caenorhabditis elegans ERGIC-53-like... 27 2.8
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 27 2.8
AF039715-3|AAB96732.2| 171|Caenorhabditis elegans Hypothetical ... 27 2.8
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 26 4.8
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 26 4.8
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 26 4.8
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 26 6.4
U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin red... 26 6.4
AF162693-1|AAD46625.1| 525|Caenorhabditis elegans thioredoxin r... 26 6.4
AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin r... 26 6.4
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 26 6.4
Z70681-2|CAA94578.2| 203|Caenorhabditis elegans Hypothetical pr... 25 8.4
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 110 bits (265), Expect = 2e-25
Identities = 57/83 (68%), Positives = 60/83 (72%)
Frame = +3
Query: 42 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPTTAFAPLRCLDEY 221
MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP +E
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVH---MMSNER 57
Query: 222 EQLSSEALEAGRI*LANQCTRRN 290
E LSSEALEA RI AN+ +N
Sbjct: 58 EHLSSEALEAARI-CANKYMVKN 79
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical
protein C09H6.2b protein.
Length = 954
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 120 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQ 28
AH +K I D + NI+ ISLVG PL + Q
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQ 840
>Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical
protein C09H6.2a protein.
Length = 982
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 120 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQ 28
AH +K I D + NI+ ISLVG PL + Q
Sbjct: 840 AHSNKLNIGDQII--NINGISLVGLPLSAAQ 868
>Z81097-10|CAB03169.1| 492|Caenorhabditis elegans Hypothetical
protein K07A1.8 protein.
Length = 492
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 15 GTRSFVENTMGRRP--ARCYRYCKNKPYP 95
GTRS+ +T G + + C R +NKPYP
Sbjct: 155 GTRSYDHHTDGSQQILSSCQRDFRNKPYP 183
>U23511-12|AAC46798.2| 610|Caenorhabditis elegans Hypothetical
protein C32D5.10 protein.
Length = 610
Score = 27.1 bits (57), Expect = 2.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 297 QFCYDGYIGWLTR 259
+FCYD +GWLT+
Sbjct: 60 EFCYDCIVGWLTK 72
>DQ384615-1|ABD34785.1| 492|Caenorhabditis elegans ERGIC-53-like
protein protein.
Length = 492
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 15 GTRSFVENTMGRRP--ARCYRYCKNKPYP 95
GTRS+ +T G + + C R +NKPYP
Sbjct: 155 GTRSYDHHTDGSQQILSSCQRDFRNKPYP 183
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 120 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQ 28
AH +K I D + NI+ ISLVG PL + Q
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQ 840
>AF039715-3|AAB96732.2| 171|Caenorhabditis elegans Hypothetical
protein R06A10.1 protein.
Length = 171
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 276 IGWLTRYGLLPAPQNSAARTHQDNVTVQTQ*WGSH 172
I WL+ Y P +++ Q+NVT W SH
Sbjct: 91 IAWLSDYHGNPTEDTPKSKSEQENVTEDPYEWISH 125
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +3
Query: 57 ARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFP-TTAFAPLRC 209
+ C YC+N ++RFC P P G + T DF F P RC
Sbjct: 1275 SECTDYCRNGHRSRTRFCAN-PKP-----SQGGAQCTGSDFELNPCFDPARC 1320
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +3
Query: 57 ARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFP-TTAFAPLRC 209
+ C YC+N ++RFC P P G + T DF F P RC
Sbjct: 1275 SECTDYCRNGHRSRTRFCAN-PKP-----SQGGAQCTGSDFELNPCFDPARC 1320
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +3
Query: 57 ARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFP-TTAFAPLRC 209
+ C YC+N ++RFC P P G + T DF F P RC
Sbjct: 1275 SECTDYCRNGHRSRTRFCAN-PKP-----SQGGAQCTGSDFELNPCFDPARC 1320
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 111 RGVPDPKIRIFDLGKKRATVDDF 179
RG P PKIR F GK DD+
Sbjct: 727 RGKPHPKIRWFKNGKDLIKPDDY 749
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 111 RGVPDPKIRIFDLGKKRATVDDF 179
RG P PKIR F GK DD+
Sbjct: 727 RGKPHPKIRWFKNGKDLIKPDDY 749
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 111 RGVPDPKIRIFDLGKKRATVDDF 179
RG P PKIR F GK DD+
Sbjct: 727 RGKPHPKIRWFKNGKDLIKPDDY 749
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 111 RGVPDPKIRIFDLGKKRATVDDF 179
RG P PKIR F GK DD+
Sbjct: 727 RGKPHPKIRWFKNGKDLIKPDDY 749
>U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin
reductase protein 1 protein.
Length = 667
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 135 RIFDLGKKRATVDDFPTTAFAPL 203
RIFD + D PTT F PL
Sbjct: 522 RIFDGANELTEYDQIPTTVFTPL 544
>AF162693-1|AAD46625.1| 525|Caenorhabditis elegans thioredoxin
reductase homolog protein.
Length = 525
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 135 RIFDLGKKRATVDDFPTTAFAPL 203
RIFD + D PTT F PL
Sbjct: 380 RIFDGANELTEYDQIPTTVFTPL 402
>AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin
reductase protein.
Length = 667
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 135 RIFDLGKKRATVDDFPTTAFAPL 203
RIFD + D PTT F PL
Sbjct: 522 RIFDGANELTEYDQIPTTVFTPL 544
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 111 RGVPDPKIRIFDLGKKRATVDDF 179
RG P PKIR F GK DD+
Sbjct: 727 RGKPHPKIRWFKNGKDLIKPDDY 749
>Z70681-2|CAA94578.2| 203|Caenorhabditis elegans Hypothetical
protein C30F2.2 protein.
Length = 203
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 54 PARCYRYCKNKPYPKSRFCRGVPDPKIRIF 143
PA CYR P P++ +GVP R+F
Sbjct: 166 PAVCYRTIYTLPPPENFAAQGVPSAFNRMF 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,436,906
Number of Sequences: 27780
Number of extensions: 144896
Number of successful extensions: 377
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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