Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F08
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 165 TVDDFPTTAFAPLRCLDEYEQLSSEAL 245
           TV  FP+T   P   +DE ++ S E++
Sbjct: 382 TVHSFPSTLNIPSVKIDEDQKCSIESI 408


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 92  IRFILTISITSRWSAPHCVLHKGPRAEF 9
           IR I+T  +    + P   +H G  AEF
Sbjct: 323 IRLIVTAPLHVEVTPPLLSVHLGGNAEF 350


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 92  IRFILTISITSRWSAPHCVLHKGPRAEF 9
           IR I+T  +    + P   +H G  AEF
Sbjct: 323 IRLIVTAPLHVEVTPPLLSVHLGGNAEF 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,031
Number of Sequences: 438
Number of extensions: 1809
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)